PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011008
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 528aa    MW: 58503.4 Da    PI: 7.2177
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA504.2e-16741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Lus10011008  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                 ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.7E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-12550No hitNo description
CDDcd002027.15E-17655No hitNo description
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003206.8E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139193.6E-10284373IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RPDPVDYEDH  60
HHHHRVSRLK NIYVSRNEEV RLVKRKAIVD VGVAVGGLVP VPDYIQNSRK VFDEDVSNRS  120
SSGSAISNSE SCAQFGSIDA SELTGSGQTV VWDSTVPSRK RTCVNRPKQS SVEKLTKDLY  180
TIWHEQQSSC FSGLSEEDDL LFESETPMVS VEIGHGSVLI RHPSAIARDE ESEASSLSVH  240
NKKYSHSANE AYSPSVIIKT PGSAIVKPQN RPGQGMQQQN LNRDKSQQEK VQVLGSHKSP  300
LCNIDLNCVI NFEEFAKQLT NEEQQQLLKY LPPVDSGRLP ESIRAMFDSP QFKENLSSYQ  360
QLMAEGVFDL SFSGAKSEDC KTLKRLTLSN FSKSKWVEHY NLLKKCRNNA GNSPAVKGNH  420
VASNFSSSSQ RIPEMKMMTR SPKRSVTYVN NELTENEASY FSPKSLFALP PEGGFEDSLN  480
FVDNDDEGDL LLDVPSNGSF PQAELLHLSN LGQQASTSSS SIRPLRP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385556.10.0GATA transcription factor 26 isoform X1
SwissprotQ8W4H11e-156GAT26_ARATH; GATA transcription factor 26
TrEMBLA9PFA90.0A9PFA9_POPTR; Uncharacterized protein
STRINGLus100110080.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-150GATA transcription factor 26