PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10003199

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Nin-like

Protein Properties

Length: 964aa MW: 105884 Da PI: 5.7735

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10003199	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.6e-28	601	651	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l+++F++++kdAAk Lgvc+T++KriCRq+GI+RWP+Rki+++ Lus10003199 601 EKSISLEVLQQHFAGSLKDAAKRLGVCPTTMKRICRQHGISRWPSRKINKV 651 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.223	588	671	IPR003035	RWP-RK domain
Pfam	PF02042	5.8E-26	604	651	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-21	858	950	No hit	No description
PROSITE profile	PS51745	19.398	865	947	IPR000270	PB1 domain
SMART	SM00666	7.8E-21	865	947	IPR000270	PB1 domain
CDD	cd06407	8.70E-37	866	946	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-23	867	947	No hit	No description
Pfam	PF00564	1.2E-15	868	946	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence Send to blast
MGEQEDTAEK SKHQNHSQEH GQQQHSVFIT SRGDSLMEMD LDLDNPWPLD QISFASSHPM 60 SPLFLSSTDA HPCSPLWTFS DADELKLTPY SATPPPSAAL RDYPIFVTCN LSSTTNREID 120 EGKKIPPPPS PRWGFAPTES PDGYSVIKER MTRALRYLKE STEQHILAQV WAPVKNGGRY 180 VLTTSEQPFV LDPHCNGLNQ YRMVSLLYTF SVDEEIDGEL HGLPGRVFQQ KLPEWTPNVQ 240 YYSSKEYPRL GHALHYNVRG TLALPVFEKS GKSCVGVVEL VMTSQLVNYA PEVDKVCKAL 300 EAVNLKSSEI LDHPNPQICN EGRQNALAEI LEILTVVCEA HKLPLAQTWV PCMHRSVLAH 360 GGGLKKSCAS FDGSCNGRVC MSVTDLAFYV VDAQVWGFRQ ACLEHHLQTG QGVAGRAFLS 420 HNACFCRDIT NFCKTQYPLV HYARMFGLHG CFSICLKSSH TGDDDYVLEF FLPPENEGFE 480 QKKLLGSLLA TMKEHFQSLK ISSGMALNEE EGFVEIIEAS EDGKLDYSLE CVRVIPHSFP 540 DVDHALPNEM EVGQQSVELN AVDNVEKSCS DVHVEGNSCT PPPLENGAKN PLVKKKRGKT 600 EKSISLEVLQ QHFAGSLKDA AKRLGVCPTT MKRICRQHGI SRWPSRKINK VNRSLTKLKR 660 VIESVQVADR AFDLTPLNNT SPLPVAVSSI SWPSDMNGSH RNSNGIPSCE IPGNLGSPEV 720 RQSSNKSKSG SVSRENSVGN STSHGSCQGS PANDSAPAKD TSDISPVHDP SPKPPVGSPP 780 GFIFDDLKLS SAAYSIPDAL VATEPFGEML VEDAGSSKDL RNLCPSIFED RVPESSGTNP 840 TPLPALAVQH YPVPDPASWQ EEAKCLIIKA MYKEDMIRFR ISPSCGIMEL KEEVGKRLKL 900 EVGVFDVKYL DDDNEWVLIV CNADLQECID ITRSSGSSIV RLAIHDVAGN LGSSCESTGG 960 ELK*

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence Send to blast

MGEQEDTAEK SKHQNHSQEH GQQQHSVFIT SRGDSLMEMD LDLDNPWPLD QISFASSHPM  60
SPLFLSSTDA HPCSPLWTFS DADELKLTPY SATPPPSAAL RDYPIFVTCN LSSTTNREID  120
EGKKIPPPPS PRWGFAPTES PDGYSVIKER MTRALRYLKE STEQHILAQV WAPVKNGGRY  180
VLTTSEQPFV LDPHCNGLNQ YRMVSLLYTF SVDEEIDGEL HGLPGRVFQQ KLPEWTPNVQ  240
YYSSKEYPRL GHALHYNVRG TLALPVFEKS GKSCVGVVEL VMTSQLVNYA PEVDKVCKAL  300
EAVNLKSSEI LDHPNPQICN EGRQNALAEI LEILTVVCEA HKLPLAQTWV PCMHRSVLAH  360
GGGLKKSCAS FDGSCNGRVC MSVTDLAFYV VDAQVWGFRQ ACLEHHLQTG QGVAGRAFLS  420
HNACFCRDIT NFCKTQYPLV HYARMFGLHG CFSICLKSSH TGDDDYVLEF FLPPENEGFE  480
QKKLLGSLLA TMKEHFQSLK ISSGMALNEE EGFVEIIEAS EDGKLDYSLE CVRVIPHSFP  540
DVDHALPNEM EVGQQSVELN AVDNVEKSCS DVHVEGNSCT PPPLENGAKN PLVKKKRGKT  600
EKSISLEVLQ QHFAGSLKDA AKRLGVCPTT MKRICRQHGI SRWPSRKINK VNRSLTKLKR  660
VIESVQVADR AFDLTPLNNT SPLPVAVSSI SWPSDMNGSH RNSNGIPSCE IPGNLGSPEV  720
RQSSNKSKSG SVSRENSVGN STSHGSCQGS PANDSAPAKD TSDISPVHDP SPKPPVGSPP  780
GFIFDDLKLS SAAYSIPDAL VATEPFGEML VEDAGSSKDL RNLCPSIFED RVPESSGTNP  840
TPLPALAVQH YPVPDPASWQ EEAKCLIIKA MYKEDMIRFR ISPSCGIMEL KEEVGKRLKL  900
EVGVFDVKYL DDDNEWVLIV CNADLQECID ITRSSGSSIV RLAIHDVAGN LGSSCESTGG  960
ELK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10003199

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU830367	0.0	EU830367.1 Linum usitatissimum clone LU0002F07 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015574468.2	0.0	protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	B9RYP2	0.0	B9RYP2_RICCO; Transcription factor, putative
STRING	Lus10003199	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Lus10003199

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]