PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10001810

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Nin-like

Protein Properties

Length: 439aa MW: 47487.3 Da PI: 4.7451

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10001810	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	70.1	3e-22	90	126	16	52
RWP-RK 16 lpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 lp+kdA+k Lgvc+T++KriCRq+GI+RWP+Rki+++ Lus10001810 90 LPLKDASKRLGVCPTTMKRICRQHGISRWPSRKINKV 126 79*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.39	57	146	IPR003035	RWP-RK domain
Pfam	PF02042	7.7E-20	90	126	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.65E-22	332	425	No hit	No description
SMART	SM00666	4.4E-25	340	422	IPR000270	PB1 domain
PROSITE profile	PS51745	23.9	340	422	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.7E-25	341	422	No hit	No description
CDD	cd06407	1.98E-39	341	421	No hit	No description
Pfam	PF00564	4.0E-18	343	421	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MKEHFQSLKI SSGMDLNEEE GFVEIIEASE DGKLDYSLEC VRVIPHSFPD VDHALPNEME 60 VGQQAVELNT VDNVEKNYSD VHVETSFPLL PLKDASKRLG VCPTTMKRIC RQHGISRWPS 120 RKINKVNRSL TKLKKVIESV QVADGAFDLT PLNNTSPLPV AVSSISWPSD MNGSHRNSNG 180 IPNCEIPGNL GSPEVRQGSN KSKSGSVSKE DSVGNSTSHG SCQGSPANES APAKDTSDVS 240 PVRDSSRKPP VGSPPGFIFD DIKLSSAAYS IPDALVATEP FGEMLVEDAG SSKDLRNLCP 300 SIFDDRVPES SGTNPAPLPA AAIRHYPVPD PASWQEEAKS LIIKAMYKED IIRFRISPSC 360 GITELKEEVG RRLKLEVGVF DVKYLDDDNE WVLIVCDADL QECIDITRSS GSSIVRLSIH 420 DVAGNLGSSC ESTGGELK*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MKEHFQSLKI SSGMDLNEEE GFVEIIEASE DGKLDYSLEC VRVIPHSFPD VDHALPNEME  60
VGQQAVELNT VDNVEKNYSD VHVETSFPLL PLKDASKRLG VCPTTMKRIC RQHGISRWPS  120
RKINKVNRSL TKLKKVIESV QVADGAFDLT PLNNTSPLPV AVSSISWPSD MNGSHRNSNG  180
IPNCEIPGNL GSPEVRQGSN KSKSGSVSKE DSVGNSTSHG SCQGSPANES APAKDTSDVS  240
PVRDSSRKPP VGSPPGFIFD DIKLSSAAYS IPDALVATEP FGEMLVEDAG SSKDLRNLCP  300
SIFDDRVPES SGTNPAPLPA AAIRHYPVPD PASWQEEAKS LIIKAMYKED IIRFRISPSC  360
GITELKEEVG RRLKLEVGVF DVKYLDDDNE WVLIVCDADL QECIDITRSS GSSIVRLSIH  420
DVAGNLGSSC ESTGGELK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10001810

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU830367	0.0	EU830367.1 Linum usitatissimum clone LU0002F07 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012086674.1	1e-151	protein NLP7
Swissprot	Q84TH9	9e-99	NLP7_ARATH; Protein NLP7
TrEMBL	A0A067JMR7	1e-150	A0A067JMR7_JATCU; Uncharacterized protein
STRING	Lus10001810	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	6e-99	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Lus10001810

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]