PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000644
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family YABBY
Protein Properties Length: 192aa    MW: 20888.8 Da    PI: 8.9915
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000644genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1563.3e-48161762160
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh....ldeslkeelleelkveeenlksnvekeesasts 95 
                  d+   s+++Cyv+CnfCnt+lav +P++ l+ +vtv+CGhC++l  ++ +   q +  ++h    l+ + k++     +  + ++    e ++  ++s
  Lus10000644  16 DLIPPSDHLCYVRCNFCNTVLAVGIPYKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCLNDHqyphLSLQEKQPGGGGGGGGGGSTGFCSEFKKLGQSS 113
                  67789**************************************9777777666555555540000333333333333333344444444333333333 PP

        YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                   s  + s+ ++  +p++p v++PPek+ r Psaynrf++eeiqrik++nP+i hreafsaaakn 
  Lus10000644 114 SS--SSSSTDQPLSPKAPFVVKPPEKKHRLPSAYNRFMREEIQRIKSANPEIPHREAFSAAAKNV 176
                  33..336677778899999*********************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.6E-5020176IPR006780YABBY protein
SuperFamilySSF470951.7E-6123173IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MNMNQQQQQE EKVTMDLIPP SDHLCYVRCN FCNTVLAVGI PYKRLLDTVT VKCGHCSNLS  60
FLSTRPPLQG QCLNDHQYPH LSLQEKQPGG GGGGGGGGST GFCSEFKKLG QSSSSSSSST  120
DQPLSPKAPF VVKPPEKKHR LPSAYNRFMR EEIQRIKSAN PEIPHREAFS AAAKNVCSHL  180
FCLVTIKSKP G*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000644
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020533631.11e-79protein CRABS CLAW isoform X2
SwissprotQ76EJ07e-59YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLB9REB68e-77B9REB6_RICCO; Protein CRABS CLAW, putative
STRINGLus100006441e-140(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.16e-55YABBY family protein