PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000587
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 555aa    MW: 60875.6 Da    PI: 7.6327
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000587genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA34.43e-1173100835
         GATA   8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   TplWR+gp  ++ LCnaCG ++r kg+
  Lus10000587  73 GTPLWRNGPPEKPVLCNACGSRWRTKGT 100
                  4********88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.00160112IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-765109No hitNo description
Gene3DG3DSA:3.30.50.105.4E-871100IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.5E-973100IPR000679Zinc finger, GATA-type
CDDcd002024.44E-1174122No hitNo description
PfamPF139195.2E-9314403IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MGKQGPCYHC GVTILLRKFE RNVESVSSIA FLSVFSIEFL AGFSKACVFA MPISNIAFLS  60
VVALSCCITL AQGTPLWRNG PPEKPVLCNA CGSRWRTKGT LVNYTPLHSR PDPVDYGRVK  120
RKAIVEADVA VGGFVTVPDY VQNSRKAFDE DVSNRSSSGS AISNSESCAQ FGSIDASELT  180
GSGQTVVWDS TVPSRKRTCV NRPKQSSVEK LTKDLYTIWH EQQSSCFSGL SEEDDLLFES  240
ETPMVSVEIG HGSVLIKHPS AIARDEESEA SSLSVHNKYS HSANEAYSRS VIIKTPGSAI  300
AKAQNRPGPN LNRDKSQHDK VQVLGSHKSP LCNIDLNCVI NFEEFAKQLT NEEQQQLLKY  360
LPSVDSGRVP ESIRAMFDSP QYKENLSSYQ QLMAEGVFDL SFPGAKSEDC KTLKRLTLSN  420
FSKSKWVEHY NLLKKCRSNG GKSPAVKGNH VASNFSSSSQ RIPEMKMIRS PKRSITYGNN  480
ELTENEASYF SPKSLFALPP EGGFEDSLNF IDDEGDLLLD VPSNGSFPQA ELLHLRNLGL  540
QASTSSSSIR PLRP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000587
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632304.10.0GATA transcription factor 26
SwissprotQ8W4H11e-125GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2C9WJ720.0A0A2C9WJ72_MANES; Uncharacterized protein
STRINGLus100005870.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-120GATA transcription factor 26