PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G13370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SRS
Protein Properties Length: 344aa    MW: 34772.3 Da    PI: 8.7592
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G13370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.16.6e-701142653153
           DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssae 95 
                       g++sCqdCGnqakkdC+h+RCRtCCksrgf CathvkstWvpaakrrerqqqlaa++++aaa+a a+  s r+ +++ +++ ++++t++ss++
  LPERR09G13370.1 114 GGGISCQDCGNQAKKDCTHMRCRTCCKSRGFACATHVKSTWVPAAKRRERQQQLAALAASAAATAgAAGPSSRDPTKRPRARPSATTTTTSSGD 207
                      5789****************************************************9999988885445555666667888999999999**** PP

           DUF702  96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                      +++ + ++++P+evsseavfrcv++++vd++e+e+aYqtavsigGhvfkGiL+d G+e
  LPERR09G13370.1 208 QQMVTVAERFPREVSSEAVFRCVKLGTVDQAEAEVAYQTAVSIGGHVFKGILHDVGPE 265
                      ********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.6E-65116265IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.1E-27118160IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.9E-22216264IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAGFPLGGGG SHHHQHHHHS RGGDNSNNPA IPPVHPSDAA ASFLYATTRG ATGSFQLWQQ  60
QEQQQHQPPF YASNIIRFAD DAPPGPSLAV AGGGGASSSS SSRGMRSSGG GGAGGGISCQ  120
DCGNQAKKDC THMRCRTCCK SRGFACATHV KSTWVPAAKR RERQQQLAAL AASAAATAGA  180
AGPSSRDPTK RPRARPSATT TTTSSGDQQM VTVAERFPRE VSSEAVFRCV KLGTVDQAEA  240
EVAYQTAVSI GGHVFKGILH DVGPEALAVA AAAAGGGQEY HFRLTGDGSS PSTAGGAAGE  300
AGSGGGGGGS IVVSSAVVMD PYPTPGPYGA FSAGAPFFHG HSRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G13370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611315.11e-133protein SHI RELATED SEQUENCE 1
TrEMBLA0A0D9XFZ50.0A0A0D9XFZ5_9ORYZ; Uncharacterized protein
STRINGLPERR09G13370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-38Lateral root primordium (LRP) protein-related