PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G05410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 278aa    MW: 29764.1 Da    PI: 6.947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G05410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17e-21104153255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  LPERR09G05410.1 104 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 153
                      59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.92E-31103163No hitNo description
Gene3DG3DSA:3.30.730.108.2E-33104163IPR001471AP2/ERF domain
SMARTSM003801.5E-35104167IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-23104163IPR016177DNA-binding domain
PROSITE profilePS5103223.354104161IPR001471AP2/ERF domain
PfamPF008476.7E-15105153IPR001471AP2/ERF domain
PRINTSPR003672.3E-11105116IPR001471AP2/ERF domain
PRINTSPR003672.3E-11127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAAAIDLSGE ELMRALEPFI RDASGSPPPV YSQFSPTSPF SFPYFQAQPE LSPAQMHYIQ  60
ARLHLQRQAA AQSGPLGPRS QPMKVAVSSS SSPAAATPPR LQKLYRGVRQ RHWGKWVAEI  120
RLPRNRTRLW LGTFDTAEEA ALAYDQAAYR LRGDAARLNF PDNAASRGPL HASVDAKLQT  180
LCQNIAAAKN AKKSSSSAAI SASASASASA STPTSNCSSP SSDDASSSVE SADSSPAATV  240
PEMQQLDFSE APWDEAAAFA LTKYPSYEID WDSLLATN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20103161463ATERF1
3gcc_A2e-20103161463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G05410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055251e-168AP005525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0564H06.
GenBankAP0055801e-168AP005580.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1759_F09.
GenBankAP0149651e-168AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankAY3050281e-168AY305028.1 Oryza sativa (japonica cultivar-group) DRE binding factor 2 (DBF2) mRNA, complete cds.
GenBankCT8305641e-168CT830564.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F08, full insert sequence.
GenBankHQ8588241e-168HQ858824.1 Oryza sativa Japonica Group isolate UT1322 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612138.11e-135ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0D9XD260.0A0A0D9XD26_9ORYZ; Uncharacterized protein
STRINGLPERR09G05410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-39ERF family protein