PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G17030.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 296aa    MW: 31686.5 Da    PI: 7.3111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G17030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95e-1853103155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aa+a+++a++ l+g
  LPERR07G17030.1  53 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAESAARAYDEAARLLRG 103
                      79********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-1253103IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-1953112IPR016177DNA-binding domain
CDDcd000182.58E-3053111No hitNo description
PROSITE profilePS5103220.00754111IPR001471AP2/ERF domain
SMARTSM003805.0E-3454117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-2854111IPR001471AP2/ERF domain
PRINTSPR003672.7E-75566IPR001471AP2/ERF domain
PRINTSPR003672.7E-77793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MELNFQAQNP VFQLQDYCYY YSQEGSAAAA AAAAAAAKPT KPRGRKKGST SHSKFVGVRQ  60
RPSGRWVAEI KDTTQKIRMW LGTFETAESA ARAYDEAARL LRGAEARTNF APRISPDCPL  120
AVRIRGLLHH KKLKKAKSAA VAAKKPATPM NTIASNCNTP TNTITSNCNS SSSMDSCDGA  180
GKQGGGGGGG EMGFGETGVE EFDSWVFDTA AFVQFPPGLD CFAAVDAVTP PPTAASPEDE  240
SSAGTPAEMA AEFERIKVER RISASLYAMN GLQEYFDKVF DASSCDPFWD LSPLCH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13521101271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G17030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037581e-149AP003758.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1562_B11.
GenBankAP0038451e-149AP003845.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1699_E05.
GenBankAP0149631e-149AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646240.11e-120ethylene-responsive transcription factor ERN1
TrEMBLA0A0D9X0P00.0A0A0D9X0P0_9ORYZ; Uncharacterized protein
STRINGLPERR07G17030.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-22related to AP2 11