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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G21530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 277aa MW: 29413.8 Da PI: 6.0616 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.9e-18 | 115 | 164 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrd + k +r++lg+f ta+eAa a++ a+++++g LPERR05G21530.1 115 YRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFATADEAALAYDVAALRMRG 164 9*******.**********332...34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.5E-14 | 114 | 164 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.762 | 114 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-35 | 114 | 178 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 114 | 172 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 115 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-22 | 115 | 173 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.92E-23 | 122 | 172 | No hit | No description |
PRINTS | PR00367 | 2.7E-10 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MAIGEAAAAA NSSQNYDTRN ILENVWATIM TTPPPPSSSS PPAVTSSVAG GEEYSAMLER 60 LPSLGRWISM GAEEWDELLL GGSSSVLASD YSSSSTTATA TATTAAAAAG ARRSYRGVRR 120 RPWGKFAAEI RDTRRKGARV WLGTFATADE AALAYDVAAL RMRGRRAHLN FPLDTVQRQL 180 DRDLLLAGAG VGAGDQTTTA TATRVRRRKR RSSAGGGGGD MSMPAARCDK MVSFADSERS 240 DQISMQECLT SDDGGAGVID FEEIGGAYWD YLFPPLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-25 | 113 | 173 | 4 | 64 | ATERF1 |
3gcc_A | 2e-25 | 113 | 173 | 4 | 64 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G21530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006655590.1 | 1e-84 | PREDICTED: ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | A0A0D9WJS4 | 0.0 | A0A0D9WJS4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G21530.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11616 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61590.1 | 2e-13 | ERF family protein |