PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G16740.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 283aa    MW: 30089.3 Da    PI: 4.363
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G16740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19148196253
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                      +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f+tae+Aa a+++a+ ++
  LPERR04G16740.1 148 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDTAEDAALAYDRAAYRM 196
                      8********.***********9987..**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-24147198No hitNo description
Gene3DG3DSA:3.30.730.102.9E-27147200IPR001471AP2/ERF domain
PfamPF008472.6E-13148196IPR001471AP2/ERF domain
PROSITE profilePS5103221.18148206IPR001471AP2/ERF domain
SMARTSM003801.3E-29148212IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-19148199IPR016177DNA-binding domain
PRINTSPR003674.3E-11149160IPR001471AP2/ERF domain
PRINTSPR003674.3E-11172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLVNHNPESA AVLETIRHHL LEVEEDEEEA VAASATTSFG SLVADMWSDS LPFRDDDADD  60
MVVFGAMRDA FSTCGWLPVP VPDCHIVFAD VKPEPSSLLS PDSSYDGSCC FGGGLADSSE  120
PVTPSEDASV EVKEEEVTAA AVGSRGKHYR GVRQRPWGKF AAEIRDPAKN GARVWLGTFD  180
TAEDAALAYD RAAYRMPGDK RMSPEPASSE SSSSSFSTTS SPSSSSTSSS GSTKRRKRGE  240
AAAVSMAMPL VPPSNWPASP QPLFPAAAAE PVAMTQRVEQ LVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-31144212169ATERF1
3gcc_A5e-31144212169ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G16740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2431883e-61AK243188.1 Oryza sativa Japonica Group cDNA, clone: J100039E18, full insert sequence.
GenBankAL6070063e-61AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence.
GenBankAP0149603e-61AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126123e-61CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankEF0618883e-61EF061888.1 Oryza sativa (japonica cultivar-group) development related ERF protein (DRE) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636763.12e-94ethylene-responsive transcription factor 2
TrEMBLA0A0D9W7U00.0A0A0D9W7U0_9ORYZ; Uncharacterized protein
STRINGLPERR04G16740.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-23ethylene responsive element binding factor 1