PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G05980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 286aa    MW: 30507.3 Da    PI: 6.5992
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G05980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.2e-20114164256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+ge
  LPERR03G05980.1 114 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDGAAFRLRGE 164
                      59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.38E-33113173No hitNo description
SMARTSM003802.4E-38114177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-32114172IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23114172IPR016177DNA-binding domain
PROSITE profilePS5103223.512114171IPR001471AP2/ERF domain
PfamPF008474.1E-14115164IPR001471AP2/ERF domain
PRINTSPR003672.4E-11115126IPR001471AP2/ERF domain
PRINTSPR003672.4E-11137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MATTVDWCGG RAGSNLPAAL YDMAAGVSLA PPSMARESAM STISFSYPCI TPGSVDAHGA  60
NSFLVAGANY LSPAQIMLVQ AQLHHRLRRP AAAAAQPMKR VAAAATPARP AAKLYRGVRQ  120
RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA ALAYDGAAFR LRGESARLNF PELRRGGAHH  180
GPPLHAAVDA KLHAICHGMD LSQSNATTTT TTTAATEIPF DGVKNEPVFS SSDESSSSAD  240
GGDVSSTGSS DVMPEMQLLD FSEAPWDESL LCKYPSLEID WDAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20113171463ATERF1
3gcc_A3e-20113171463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G05980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1166041e-106AC116604.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence.
GenBankAC2191851e-106AC219185.1 Oryza officinalis clone OO__Ba0118D01, complete sequence.
GenBankAK2412431e-106AK241243.1 Oryza sativa Japonica Group cDNA, clone: J065128M14, full insert sequence.
GenBankAK2876941e-106AK287694.1 Oryza sativa Japonica Group cDNA, clone: J065128M14, full insert sequence.
GenBankAP0149591e-106AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-106CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8419491e-106CT841949.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629130.11e-113ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E42e-57RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0D9VQL00.0A0A0D9VQL0_9ORYZ; Uncharacterized protein
STRINGLPERR03G05980.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.16e-40related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]