PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G05390.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 259aa    MW: 29311.2 Da    PI: 9.277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G05390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-19115164255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +grW+AeIrdp +    +r++lg++g+aeeAa a+++ +++++g
  LPERR03G05390.1 115 KYRGVRRRP-SGRWAAEIRDPAK---GRRIWLGTHGSAEEAAMAYDREARRIRG 164
                      8********.7*********843...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.05E-29115173No hitNo description
PROSITE profilePS5103222.062115172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-28115173IPR001471AP2/ERF domain
PfamPF008478.9E-13115164IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-21115173IPR016177DNA-binding domain
SMARTSM003802.9E-32115178IPR001471AP2/ERF domain
PRINTSPR003671.5E-7116127IPR001471AP2/ERF domain
PRINTSPR003671.5E-7138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MCGGAILAEF IPARVRRRLT AADLLPEASS SGSGRRTSWK RKANASSTSY DEFEAEFELF  60
NDDDDTEFEL SDSEQEEALD VSSKSKAPSF AFSLISKPQR RVPAAGGGKT RKKNKYRGVR  120
RRPSGRWAAE IRDPAKGRRI WLGTHGSAEE AAMAYDREAR RIRGKAARLN FPHRRSSWAI  180
GIGIGIDLNL PPKSDEVVTT MEIMEDSMMV MQMQCCDTAA RISECDREME EIAAVQRELE  240
RRMRQVYERR CRLVIDQRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-19112177268ATERF1
3gcc_A4e-19112177268ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G05390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651102.13e-78PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A0D9VQC10.0A0A0D9VQC1_9ORYZ; Uncharacterized protein
STRINGLPERR03G05390.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.38e-31ERF family protein