PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v2006500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 26133.6 Da PI: 8.7905 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.3 | 1.8e-33 | 56 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 lp+G++F+P+d+e++ e+L++kv ++ ++l+ +i++++ i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + Lj6g3v2006500.1 56 LPAGVKFDPNDQEIL-EHLEAKVVSDVCKLHPlidqFIPTLQgdngICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHtddegsE 147 799***********9.99*****99995543333332433322334**********.566677888******************7444565557 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ +g+++g kk++v+y gr++k+ekt+Wvmh+y+l Lj6g3v2006500.1 148 TRWHKTGKTRAVFAGGGAVKGFKKIMVLYtnFGRQRKPEKTNWVMHQYHL 197 88***************************5547999************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-37 | 51 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.478 | 56 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-15 | 57 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MKWCNDSDKE KGNEYLITPT NTPKAIINLT EGIHTIKCPS CSHNMEVRDQ GGIHGLPAGV 60 KFDPNDQEIL EHLEAKVVSD VCKLHPLIDQ FIPTLQGDNG ICYTHPEKLP GVSKDGQVRH 120 FFHRPSKAYT TGTRKRRKVH TDDEGSETRW HKTGKTRAVF AGGGAVKGFK KIMVLYTNFG 180 RQRKPEKTNW VMHQYHLGSN EEEQDGELVV SKVFYQTQPR QCGTSIIRDP P |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v2006500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009668 | 0.0 | AP009668.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT04E21, TM0336, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027366168.1 | 1e-140 | NAC domain-containing protein 73-like | ||||
Refseq | XP_027366178.1 | 1e-140 | NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-111 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A371EGC4 | 1e-138 | A0A371EGC4_MUCPR; NAC domain-containing protein 73 | ||||
STRING | XP_007148112.1 | 1e-133 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-105 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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