PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0766120.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SRS
Protein Properties Length: 342aa    MW: 36964.9 Da    PI: 7.5414
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0766120.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702179.11.9e-551563047152
           DUF702   7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskk.qsalsstklssaeskk 98 
                       CqdCGn+akkdC ++RCRtCCk rg+dC+thvkstWvpa +rrer  +  +  +         +  kr++  ++++ +++ ss++l++++ ++
  Lj3g3v0766120.1 156 VCQDCGNRAKKDCLFRRCRTCCKGRGYDCNTHVKSTWVPAVRRREREVTVVSGGEGGGGGDgGCSVVKRPKPFSHNAtATSHSSKSLANSSCHQ 249
                      6*********************************************888877766665544488888999887444304444555566666666 PP

           DUF702  99 eletss.lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152
                         +++ lP +v+++avfrc rv+++ +ge+e+aY ++v+i+Ghvf+G+Lyd+G+
  Lj3g3v0766120.1 250 DAGFKEsLPGHVRAPAVFRCHRVTAIGNGEDEFAYLATVHISGHVFQGFLYDHGV 304
                      6555434***********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016234.1E-26156198IPR006510Zinc finger, lateral root primordium type 1
PfamPF051422.1E-53156304IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016244.1E-23257304IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSMLGLRDLV FIAPNPSSLH HQHQHQVQPI SSDPNSNLNP LPSSASLSVG FGIFPLLTAT  60
PCMPQQQHQQ HPQNNNNEVQ NQECAANNTN TNTNTNTATN YWNLKMCPEV DPDPPKKGAM  120
NNLVDDDENH HNNNNKLVMT TSESEENGVY GPDFRVCQDC GNRAKKDCLF RRCRTCCKGR  180
GYDCNTHVKS TWVPAVRRRE REVTVVSGGE GGGGGDGGCS VVKRPKPFSH NATATSHSSK  240
SLANSSCHQD AGFKESLPGH VRAPAVFRCH RVTAIGNGED EFAYLATVHI SGHVFQGFLY  300
DHGVGGKNAC VSELQLGKNC SGKNGDSAIG VPHNHAYPAS AS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.131860.0cell culture| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0766120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343077.11e-148protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A445KZZ31e-144A0A445KZZ3_GLYSO; Protein LATERAL ROOT PRIMORDIUM 1 isoform A
TrEMBLK7KK001e-144K7KK00_SOYBN; Uncharacterized protein
STRINGGLYMA04G17885.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.28e-44Lateral root primordium (LRP) protein-related