PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0128449.1
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 238aa    MW: 27159.9 Da    PI: 10.5306
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0128449.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssasec....eaesssssas...nsssg 88 
                       +kdrhskihT++g+RdRR+Rls+++ +rfF Lqd+LGfdk+s+t+eWLl+qak +i +l+g  ss ++sec    ++ +++++++   +   +
                      69*************************************************************645555778765522233332223322...1 PP

              TCP  89 ....kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                          + a ++  + k+++++a ++ lake r++ar+rarert+ekmr+k+
                      3346888888899999999999*************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.9E-4134170IPR005333Transcription factor, TCP
PROSITE profilePS5136933.3743492IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.809151168IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
Nucleic Localization Signal ? help Back to Top
No. Start End Sequence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the axillary bud of the first formed leaf node (PubMed:17655651). Expressed in axillary buds, shoot apical meristem, young leaves, vascular tissues and the tips of crown roots (PubMed:20547591). {ECO:0000269|PubMed:17655651, ECO:0000269|PubMed:20547591}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}.
Cis-element ? help Back to Top
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027333308.12e-54transcription factor DICHOTOMA-like
SwissprotQ8LN682e-30TB1_ORYSJ; Transcription factor TB1
TrEMBLA0A0L9TSH08e-50A0A0L9TSH0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7538e-50A0A0S3R753_PHAAN; Uncharacterized protein
STRINGGLYMA05G07943.15e-43(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.16e-24TCP family protein
Publications ? help Back to Top
  1. Lukens L,Doebley J
    Molecular evolution of the teosinte branched gene among maize and related grasses.
    Mol. Biol. Evol., 2001. 18(4): p. 627-38
  2. Takeda T, et al.
    The OsTB1 gene negatively regulates lateral branching in rice.
    Plant J., 2003. 33(3): p. 513-20
  3. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
  4. Arite T, et al.
    DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice.
    Plant J., 2007. 51(6): p. 1019-29
  5. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
  6. Minakuchi K, et al.
    FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice.
    Plant Cell Physiol., 2010. 51(7): p. 1127-35
  7. Mondragón-Palomino M,Trontin C
    High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots.
    Ann. Bot., 2011. 107(9): p. 1533-44
  8. Xia K, et al.
    OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice.
    PLoS ONE, 2012. 7(1): p. e30039
  9. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
  10. Byeon Y,Back K
    An increase in melatonin in transgenic rice causes pleiotropic phenotypes, including enhanced seedling growth, delayed flowering, and low grain yield.
    J. Pineal Res., 2014. 56(4): p. 408-14
  11. Yano K, et al.
    Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism.
    Mol Plant, 2015.
  12. Chen Z,Gao X,Zhang J
    Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway.
    Plant Cell Rep., 2015. 34(5): p. 767-81
  13. Yano K, et al.
    Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism.
    Mol Plant, 2015. 8(2): p. 303-14
  14. Jung H,Lee DK,Choi YD,Kim JK
    OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.
    Plant Sci., 2015. 236: p. 304-12
  15. Li S
    The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development.
    Plant Signal Behav, 2015. 10(7): p. e1044192
  16. Yang X, et al.
    Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae.
    Plant Physiol., 2015. 169(3): p. 2138-51
  17. De Paolo S,Gaudio L,Aceto S
    Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica.
    Sci Rep, 2015. 5: p. 16265
  18. Álvarez-Salgado E,Arredondo-Peter R
    Effect of the synthesis of rice non-symbiotic hemoglobins 1 and 2 in the recombinant Escherichia coli TB1 growth.
    F1000Res, 2015. 4: p. 1053
  19. Li X, et al.
    MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds.
    Sci Rep, 2016. 6: p. 32158