PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0101719.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 423aa    MW: 48090.2 Da    PI: 6.6572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0101719.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-19196246256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Lj0g3v0101719.1 196 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 246
                      59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.24E-33195255No hitNo description
SMARTSM003801.5E-40196259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-32196254IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23196254IPR016177DNA-binding domain
PROSITE profilePS5103222.998196253IPR001471AP2/ERF domain
PRINTSPR003677.2E-11197208IPR001471AP2/ERF domain
PfamPF008472.4E-12197246IPR001471AP2/ERF domain
PRINTSPR003677.2E-11219235IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAEADHNTRK VTKMGESQDW EIQKGKFEDS IAHNRPLKKI QRRNPNQQQQ QQQQPSPSSV  60
PSSTASRIVF PFAFDTSQQP PMQFPNQLTP NLPYLHPPMQ LQTTQQQQQQ MISFGSQQQQ  120
NIAYPPLIAR DSTLPQQNQQ QQQYQQHLLQ YWSDALNLSP RGRMMMMLNN NNTRFGPHGS  180
TIRPPQPIQP INTTKLYRGV RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE DAAMAYDREA  240
FKLRGENARL NFPELFLNKD KDKDKDKDDK EPSCSTPAHT TTSSASSPPS GHSAAAKKKK  300
QIEPAIESSD VQQLPPTEEE SNENDSGVGS SGDATVMSDE GQAVSQEFVW GEMSAWFNAI  360
PAAWGPGSPV WDDNDLFLHS HLPFATNPNQ QEFNDAVDHQ RQDHNMGMAS GSSMRPFFWK  420
DQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20195253160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642LKKIQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0101719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341578.11e-128ethylene-responsive transcription factor ERF053
TrEMBLI1LUF41e-125I1LUF4_SOYBN; Uncharacterized protein
STRINGGLYMA12G33020.11e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.17e-52ERF family protein