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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0099329.1 | ||||||||
Common Name | NAM-A43 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 54aa MW: 6303.19 Da PI: 4.8792 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62 | 1.8e-19 | 7 | 53 | 1 | 48 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 lppGfrFhPtdeelv++yL+ k++g++++ +vike+d+yk++Pw+Lp Lj0g3v0099329.1 7 LPPGFRFHPTDEELVNHYLCTKCAGQSFNY-SVIKEIDLYKFDPWQLP 53 79**************************99.99**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-20 | 3 | 54 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.973 | 7 | 54 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.8E-9 | 8 | 50 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 54 aa Download sequence Send to blast |
MKGELELPPG FRFHPTDEEL VNHYLCTKCA GQSFNYSVIK EIDLYKFDPW QLPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-22 | 2 | 53 | 10 | 61 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.6202 | 6e-87 | cell culture| floral bud| protoplast| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0099329.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB378639 | 5e-84 | AB378639.1 Lotus japonicus NAM-A43 mRNA for transcription factor NAC, complete cds. | |||
GenBank | BT136992 | 5e-84 | BT136992.1 Lotus japonicus clone JCVI-FLLj-4N12 unknown mRNA. | |||
GenBank | BT145992 | 5e-84 | BT145992.1 Lotus japonicus clone JCVI-FLLj-17M21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004502989.1 | 2e-27 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 4e-22 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | B3IX39 | 9e-31 | B3IX39_LOTJA; Transcription factor NAC | ||||
STRING | XP_004502989.1 | 6e-27 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11433 | 17 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-24 | NAC family protein |