PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp1071s0023.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 462aa    MW: 52263.6 Da    PI: 4.4203
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp1071s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS123.42.7e-381004612374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lL + Aea ++++++l + + + + ++a p g++++Rl +y+ +         +++ y+ l+ +++      +   a+k+f++++P+ 
  Kaladp1071s0023.1.p 100 AHLLKAHAEATEAEHTRLMEVIQTCVLDQAGPVGETTERLSFYLFKP--------QPQ-YSYLKQESQ-----PNFDVAYKAFYQLFPYG 175
                          68888999999999999999999999999999999999999996543........233.333333333.....3556789********** PP

                 GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          ++ h++aN+aIlea+  +  +  i+Dfd++ G+QW++L+++La ++++   l + +++     + +  e t++rL++ A+++  +++ + 
  Kaladp1071s0023.1.p 176 RVPHIAANSAILEALPAHaGTFNIVDFDMGDGVQWAPLIDTLARQNKE---LSLMAIKW---AEDDDFEDTRRRLESHARSVAAKLRVQE 259
                          ***************9887999*********************97665...88888888...46899**********************9 PP

                 GRAS 181 lvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqeadhnse....sFlerflea 260
                          ++++  +++++  + r+ +    a n++++l ++   ++ +e++ +++L + k+l     +  ++++ e ead n++    ++   f + 
  Kaladp1071s0023.1.p 260 VAMEdLVSEVKRISKRCAQAPWFAFNCMVSLPHMI--KGRSEEKVRQFLTVAKDLlgdstNCGMITFGEGEADANKQtnlsNYSSFFERQ 347
                          9555256677777779999***************9..67777779*******976444448889*******9998885555677788899 PP

                 GRAS 261 leyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                          l  + al++s+e ++++++ e+++ +E  +l+++i++    ++ e    +++ ++ r++  + G++ ++l++++ ++a+ l+r+ ++  y
  Kaladp1071s0023.1.p 348 LARHQALLESVEWTFSEQQlEAKVAIECLFLAPSITSHGWLQKWE---HMNEEGNVRAAAATLGLEGLRLGQTTLTEANKLVRRGEDSSY 434
                          *****************9999999***********9987777776...77778899******************************8889 PP

                 GRAS 350 rve..eesgslvlgWkdrpLvsvSaWr 374
                          ++   e+++++vl W++ pLv +S Wr
  Kaladp1071s0023.1.p 435 KLRlgEDENEMVLEWRGTPLVRLSTWR 461
                          98888*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.58873439IPR005202Transcription factor GRAS
PfamPF035149.2E-36100461IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDFNFLESLE FPWSTEESQN WVMEDFPPSL WSTEGSQSWD MEEEEELQQY AWNQVDGVLS  60
MDSSFSTQNS CTVEFGACDS GQVTMTNAPS ELACNELSLA HLLKAHAEAT EAEHTRLMEV  120
IQTCVLDQAG PVGETTERLS FYLFKPQPQY SYLKQESQPN FDVAYKAFYQ LFPYGRVPHI  180
AANSAILEAL PAHAGTFNIV DFDMGDGVQW APLIDTLARQ NKELSLMAIK WAEDDDFEDT  240
RRRLESHARS VAAKLRVQEV AMEDLVSEVK RISKRCAQAP WFAFNCMVSL PHMIKGRSEE  300
KVRQFLTVAK DLLGDSTNCG MITFGEGEAD ANKQTNLSNY SSFFERQLAR HQALLESVEW  360
TFSEQQLEAK VAIECLFLAP SITSHGWLQK WEHMNEEGNV RAAAATLGLE GLRLGQTTLT  420
EANKLVRRGE DSSYKLRLGE DENEMVLEWR GTPLVRLSTW R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010653403.11e-118PREDICTED: nodulation-signaling pathway 2 protein
TrEMBLA0A438GC471e-119A0A438GC47_VITVI; Nodulation-signaling pathway 2 protein
STRINGEOY071071e-115(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.17e-14GRAS family protein