PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0487s0001.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 768aa MW: 85318.2 Da PI: 4.7122

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0487s0001.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	340.2	3.6e-104	428	764	1	339
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL+ cA+avss+d + a++lL ++++ asp gd +qRla++f+++L+ar+a++++++y + ++++ + ++ l+a++++ ++ P+ Kaladp0487s0001.3.p 428 LRTLLVLCAQAVSSDDWRTANQLLRQIRQYASPLGDGTQRLAHCFANGLEARMAGTGNQIYTSRSSRRIT---AADILKAYQVYLHAIPF 514 5789*******************************************************887777777...9************ PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 ++ aNq+I +a+++++++Hi+Df+i +G+QWp ++q L+ R++gpp+lRiTg++ p++g +e++eetg+rL+k+++++gvpfe+ Kaladp0487s0001.3.p 515 KQIVMSFANQMIFQAASKAQTLHIVDFGILYGFQWPIFIQCLSRREGGPPKLRITGIDLPQPGfrPAERVEETGRRLEKYCKRFGVPFEY 604 **********************************************************9*********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 + +ak+++++++e+L++k++E laVn+ ++l++llde+v+ +s+r++vL+l+++++P+++++ + ++n++ F++rf eal yysalf Kaladp0487s0001.3.p 605 YA-IAKKWDTIRIEDLSIKRNEFLAVNCLFRLKNLLDETVDDTSPRNAVLSLIREMNPDIFTHGIANGSYNAPFFVTRFREALFYYSALF 693 .7************************************************************************************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 d ++a++pr+++er + E el g+++ nv+aceg er+er et+++W+ r ++aGF+++pl+++++++ + Kaladp0487s0001.3.p 694 DVFDATIPRDNQERLMFEGELYGKDAINVIACEGVERVERPETYKQWQVRCNRAGFRQLPLDKEVMTKLRN 764 ***************************************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.58	402	768	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-101	428	764	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence Send to blast
MVMDPYLNGF RGFDDDDDKG VAEFDSFAGN EIHLADGGVG SLDFIDSLIV SPFRGGHGGA 60 AADSTLPFFG MSPQRDSVSG EGGDLSDPVF KYINQMLMEE DMGEKAWMLH DSLALSVAEK 120 SLYDALGEKY PDRPSVLVDS PDGSTSQSFG FSESSSSGSS NANGASYALN DAYQSDHVPP 180 YQPVSLTQNS VPAADVSQPS SFGTGKGFPL RGFDQGVNDF ESNSSSLKGS GSGNSYSSTF 240 NGFDLNGNGL GNAPLSSFQA SEIFNDSEYI MQFQRGVEEA SKFLPKTSNL IIDLDKYQPV 300 VPEPNEVGLL ASAGRSYEDE DKSFVNGFPA AEAEKNVKES SANGSRGNRS RGRKRGEIEM 360 EDERMNKQSA VYVDEEELSV MFDNVLLHCR VKEEAPDSDV CERSPSEKNR NLNETGRDKK 420 QGTDAVDLRT LLVLCAQAVS SDDWRTANQL LRQIRQYASP LGDGTQRLAH CFANGLEARM 480 AGTGNQIYTS RSSRRITAAD ILKAYQVYLH AIPFKQIVMS FANQMIFQAA SKAQTLHIVD 540 FGILYGFQWP IFIQCLSRRE GGPPKLRITG IDLPQPGFRP AERVEETGRR LEKYCKRFGV 600 PFEYYAIAKK WDTIRIEDLS IKRNEFLAVN CLFRLKNLLD ETVDDTSPRN AVLSLIREMN 660 PDIFTHGIAN GSYNAPFFVT RFREALFYYS ALFDVFDATI PRDNQERLMF EGELYGKDAI 720 NVIACEGVER VERPETYKQW QVRCNRAGFR QLPLDKEVMT KLRNKMEA

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence Send to blast

MVMDPYLNGF RGFDDDDDKG VAEFDSFAGN EIHLADGGVG SLDFIDSLIV SPFRGGHGGA  60
AADSTLPFFG MSPQRDSVSG EGGDLSDPVF KYINQMLMEE DMGEKAWMLH DSLALSVAEK  120
SLYDALGEKY PDRPSVLVDS PDGSTSQSFG FSESSSSGSS NANGASYALN DAYQSDHVPP  180
YQPVSLTQNS VPAADVSQPS SFGTGKGFPL RGFDQGVNDF ESNSSSLKGS GSGNSYSSTF  240
NGFDLNGNGL GNAPLSSFQA SEIFNDSEYI MQFQRGVEEA SKFLPKTSNL IIDLDKYQPV  300
VPEPNEVGLL ASAGRSYEDE DKSFVNGFPA AEAEKNVKES SANGSRGNRS RGRKRGEIEM  360
EDERMNKQSA VYVDEEELSV MFDNVLLHCR VKEEAPDSDV CERSPSEKNR NLNETGRDKK  420
QGTDAVDLRT LLVLCAQAVS SDDWRTANQL LRQIRQYASP LGDGTQRLAH CFANGLEARM  480
AGTGNQIYTS RSSRRITAAD ILKAYQVYLH AIPFKQIVMS FANQMIFQAA SKAQTLHIVD  540
FGILYGFQWP IFIQCLSRRE GGPPKLRITG IDLPQPGFRP AERVEETGRR LEKYCKRFGV  600
PFEYYAIAKK WDTIRIEDLS IKRNEFLAVN CLFRLKNLLD ETVDDTSPRN AVLSLIREMN  660
PDIFTHGIAN GSYNAPFFVT RFREALFYYS ALFDVFDATI PRDNQERLMF EGELYGKDAI  720
NVIACEGVER VERPETYKQW QVRCNRAGFR QLPLDKEVMT KLRNKMEA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-47	435	761	26	341	Protein SCARECROW
5b3h_A	6e-47	435	761	25	340	Protein SCARECROW
5b3h_D	6e-47	435	761	25	340	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018836067.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A314ZFC9	0.0	A0A314ZFC9_PRUYE; Scarecrow-like protein 14
STRING	POPTR_0009s03800.1	0.0	(Populus trichocarpa)
STRING	XP_007132057.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Kaladp0487s0001.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]