PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0262s0034.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 353aa    MW: 38690.4 Da    PI: 8.2692
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0262s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.5e-41200277178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cq+egC+adls+ak+yhrrhkvCe+hsk+++v++ gl+qrfCqqCsrfh l+efD++krsCr+rLa+hn+rrrk+ +
  Kaladp0262s0034.1.p 200 RCQAEGCAADLSNAKHYHRRHKVCEFHSKSATVIAGGLTQRFCQQCSRFHLLTEFDNGKRSCRKRLADHNRRRRKTPQ 277
                          6**************************************************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.0E-34195262IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.223198275IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-38199277IPR004333Transcription factor, SBP-box
PfamPF031101.5E-30201274IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MLEYEPWGNP SQMILGSAED DPAQVVSDHH GIDIFNTNGN SSNGHHSALS LDYAQAAAAT  60
DPHHHHHQGV TFSSSPNLNA FSQHHHHHHQ FFNADHQAAS LNALYDPRAF PSSYAPQHHF  120
DAALTGLNPN SAHPGGAGYF LVPKTEEGAA AGRQQGTRIG LNLGHRTYFS AQDDDFVNRL  180
YRRSRPGGMD ACGGSVNAPR CQAEGCAADL SNAKHYHRRH KVCEFHSKSA TVIAGGLTQR  240
FCQQCSRFHL LTEFDNGKRS CRKRLADHNR RRRKTPQQPS GQGQLELQKS PMDNSSSETL  300
TKSPPESSAL THPSSSVTIA ISPPRMTLEC FRQRSYREMA SSSSSSSVFY SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29194274484squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375255.12e-97squamosa promoter-binding-like protein 8
RefseqXP_012083646.11e-97squamosa promoter-binding-like protein 8
TrEMBLA0A067JXX73e-96A0A067JXX7_JATCU; Uncharacterized protein
TrEMBLU5FUU64e-96U5FUU6_POPTR; SBP family protein
STRINGPOPTR_0014s05680.16e-97(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-72squamosa promoter binding protein-like 8