PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0208s0002.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 780aa    MW: 85221.6 Da    PI: 6.4838
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0208s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.31.3e-1274097682374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lLl+cAeavs+++le+a+++L ++s+l++p g++ qR+aayf eA+++rl++s+ ++y++lp++  ++++++ + +a+++f+ +sP++
  Kaladp0208s0002.1.p 409 LTLLLQCAEAVSADNLEEANQMLLEISQLSTPFGTSAQRVAAYFSEAMSSRLVSSCLGIYRSLPATVLPHYTHKMVSSAFQVFNGISPFV 498
                          579*************************************************************************************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          kfsh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + 
  Kaladp0208s0002.1.p 499 KFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----SMEALEATGKRLSDFADKLGLPFEFFP- 583
                          **********************************************************....***************************. PP

                 GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          va+++ +l+le+L+++++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl
  Kaladp0208s0002.1.p 584 VAEKIGNLDLEKLNISRREAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSL 666
                          7*************************9..999999999999....**********************.899******************* PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                           a++ +eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+++e+GF+ ++l  +aa+qa lll +++ dgy++ e+sg+l lg
  Kaladp0208s0002.1.p 667 GASYDEESEERHVVEQQLLSREIRNVLAVGGPSRSGEVK-FQNWREKFQESGFRGISLAGNAATQATLLLGMFPCDGYTLVEDSGTLKLG 755
                          *********************************888776.************************************************** PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          Wkd  L+++SaWr
  Kaladp0208s0002.1.p 756 WKDLCLLTASAWR 768
                          ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.831382748IPR005202Transcription factor GRAS
PfamPF035144.5E-125409768IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MSATTCSDPS NSAPVTDDIV SSSAANNQPH PKMLRKRTAS DLNSSSNTLY HQQHRFPRRI  60
SQDHAGNDSG VAPDRNPSFD SVLDCSGFQR PPAAAAAAAA IATTTLVPNN NHSTSLSVTL  120
PMTSTLTSLT QLAPPPDASS SSSLSHHHLL PPPPSALPAV CNFSGLPLFP PQHHHYHHLQ  180
RPIPPAPDSS MDDSRSSTAW IDGIIKDLIH SSSASVSIPQ LIHNVREIIF PCNPTLAAQL  240
EHRLRFLTES AASRLPEMPV RKDAVAVQSP LLPPPPRQQY QHHQQQHHLL LDGSAHHLPY  300
DTVIVPSQIT AAHSQPSNWG AAALPAPPPP PHQQSCNDQN TVTNLPNPRQ QSEQSDERET  360
SSPSDPAGSV VTPSPTETAP SPTAALASYK QMKEEARQRQ RDEEGLHLLT LLLQCAEAVS  420
ADNLEEANQM LLEISQLSTP FGTSAQRVAA YFSEAMSSRL VSSCLGIYRS LPATVLPHYT  480
HKMVSSAFQV FNGISPFVKF SHFTANQAIQ EAFEREDRVH IIDLDIMQGL QWPGLFHILA  540
SRPGGPPFVR LTGLGTSMEA LEATGKRLSD FADKLGLPFE FFPVAEKIGN LDLEKLNISR  600
REAVAVHWLQ HSLYDVTGSD TNTLWLLQRL APKVVTVVEQ DLSHAGSFLG RFVEAIHYYS  660
ALFDSLGASY DEESEERHVV EQQLLSREIR NVLAVGGPSR SGEVKFQNWR EKFQESGFRG  720
ISLAGNAATQ ATLLLGMFPC DGYTLVEDSG TLKLGWKDLC LLTASAWRPY QPNPHYYVH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A0.03937693379Protein SCARECROW
5b3h_D0.03937693379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463324.20.0PREDICTED: protein SCARECROW 1
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A1S3CJ050.0A0A1S3CJ05_CUCME; protein SCARECROW 1
STRINGXP_004163982.10.0(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein