PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0094s0012.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 546aa MW: 59812 Da PI: 7.4983

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0094s0012.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.3	1.6e-41	170	246	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rh+vC++hsk+++v+v+g+eqrfCqqCsrfh l efDe+krsCrrrLa+hnerrrk++ Kaladp0094s0012.3.p 170 TCQVYGCNKDLSSSKDYHKRHRVCDTHSKTAKVIVKGIEQRFCQQCSRFHLLAEFDEGKRSCRRRLAGHNERRRKPH 246 6**************************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.1E-33	165	232	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.368	168	245	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.27E-37	169	248	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-31	171	244	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010468	Biological Process	regulation of gene expression
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MQPHVMESWC QKGSVSGDLV YVPDSLGRHS KLLEVNGPVL GDNKLISEKG SDSIVEEVRY 60 STLSGNPFLT NFAWDVRFNK GSTGEQIAPT MSSPNLFLAD DGFSSKLPSP FSDSNCQEST 120 HIDLKLGRVA DYGGSKTFKL FPGSSMVFSA ESSTPIKRTR SAGLNSQTFT CQVYGCNKDL 180 SSSKDYHKRH RVCDTHSKTA KVIVKGIEQR FCQQCSRFHL LAEFDEGKRS CRRRLAGHNE 240 RRRKPHMGKH CGRSGRFQSY HGGAFNGISF TKTSSVCENM VPTNQLQLEK LGENGWNQHI 300 KLEFESNYNN LFGFLPANGN LLPKSSLPDV NLGKQYPCLY EGQANHLLRS VTTRSTGDDY 360 SHGMPGLPCS DLSYSVTSGG NQDSKVFCIE PAFNDFSTTM SPGALSLLSS QSQDSPNYST 420 GIPMTQASSI TGNPANCSGI PVSDTLLTAI PVASVNGMSH KLASCGLRSE ISNLCPILIP 480 DDRVGVHFED SELFHGLTAD TDRLSCEDEL TIDLLQLSSQ LQRVERQKQF VYATSHTTMN 540 TTARQ*

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MQPHVMESWC QKGSVSGDLV YVPDSLGRHS KLLEVNGPVL GDNKLISEKG SDSIVEEVRY  60
STLSGNPFLT NFAWDVRFNK GSTGEQIAPT MSSPNLFLAD DGFSSKLPSP FSDSNCQEST  120
HIDLKLGRVA DYGGSKTFKL FPGSSMVFSA ESSTPIKRTR SAGLNSQTFT CQVYGCNKDL  180
SSSKDYHKRH RVCDTHSKTA KVIVKGIEQR FCQQCSRFHL LAEFDEGKRS CRRRLAGHNE  240
RRRKPHMGKH CGRSGRFQSY HGGAFNGISF TKTSSVCENM VPTNQLQLEK LGENGWNQHI  300
KLEFESNYNN LFGFLPANGN LLPKSSLPDV NLGKQYPCLY EGQANHLLRS VTTRSTGDDY  360
SHGMPGLPCS DLSYSVTSGG NQDSKVFCIE PAFNDFSTTM SPGALSLLSS QSQDSPNYST  420
GIPMTQASSI TGNPANCSGI PVSDTLLTAI PVASVNGMSH KLASCGLRSE ISNLCPILIP  480
DDRVGVHFED SELFHGLTAD TDRLSCEDEL TIDLLQLSSQ LQRVERQKQF VYATSHTTMN  540
TTARQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-28	171	244	11	84	squamosa promoter binding protein-like 4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	4e-46	SBP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0094s0012.3.p