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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0093s0097.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 184aa MW: 21204.3 Da PI: 6.5127 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 226 | 1.8e-69 | 2 | 182 | 192 | 373 |
GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 e+L+v++gEala n+ lqlh+++desv+++++rd +L++vksl+Pkvv+++eqe+++n+++F++rfle+l+yysa+f+s+++++pr+s+e Kaladp0093s0097.1.p 2 EMLDVRSGEALAMNFPLQLHHTPDESVDVNNPRDGLLRMVKSLNPKVVTLIEQESNTNTTPFFNRFLETLDYYSAMFESIDVTMPRDSKE 91 89**************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 ri+vE ++l+r+ vn++aceg+er+erhe l+kW++r+++aGF++ pls+++++ + +ll+ ++ + y++ee++g+++lgWk+r+Lvs+S Kaladp0093s0097.1.p 92 RINVEMHCLARDMVNIIACEGKERVERHELLGKWKSRFTMAGFRQFPLSTYVNSVIGSLLKCYS-EHYTLEERDGAMLLGWKRRNLVSAS 180 ************************************************************9988.66*********************** PP GRAS 372 aW 373 aW Kaladp0093s0097.1.p 181 AW 182 ** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 32.268 | 1 | 164 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.2E-67 | 2 | 182 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEMLDVRSGE ALAMNFPLQL HHTPDESVDV NNPRDGLLRM VKSLNPKVVT LIEQESNTNT 60 TPFFNRFLET LDYYSAMFES IDVTMPRDSK ERINVEMHCL ARDMVNIIAC EGKERVERHE 120 LLGKWKSRFT MAGFRQFPLS TYVNSVIGSL LKCYSEHYTL EERDGAMLLG WKRRNLVSAS 180 AWH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-28 | 6 | 183 | 197 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015898184.1 | 1e-118 | chitin-inducible gibberellin-responsive protein 1-like | ||||
Swissprot | Q69VG1 | 1e-105 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A2P6QBM1 | 1e-114 | A0A2P6QBM1_ROSCH; Putative transcription factor GRAS family | ||||
TrEMBL | A0A2R6QDF0 | 1e-114 | A0A2R6QDF0_ACTCH; Chitin-inducible gibberellin-responsive protein | ||||
TrEMBL | A0A498K7Y7 | 1e-114 | A0A498K7Y7_MALDO; Uncharacterized protein | ||||
STRING | XP_008365835.1 | 1e-115 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 5e-92 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0093s0097.1.p |
Publications ? help Back to Top | |||
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