PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0088s0066.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 445aa MW: 48862.3 Da PI: 8.2643

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0088s0066.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2e-40	173	250	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls k+yhr+h++Ce hsk+p+v+v gle+rfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+++ Kaladp0088s0066.1.p 173 RCQVEGCNVDLSGSKDYHRKHRICESHSKCPKVIVGGLERRFCQQCSRFHKLSEFDEKKRSCRKRLSDHNARRRKPRS 250 6**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.9E-33	166	235	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.385	171	248	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.94E-37	172	252	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.2E-32	174	247	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MWDTGSSLQF DWENLVMLDG KGNQVPLKLN SSVWGSDIDG IHLHSHACDF GSINRFSGLD 60 AAHVSSVSSK STSADSSSLG KTSIISVFDE SRSVSIAVDF AKSKNPAAAS SVSVEASGGS 120 VEPVIGLKLG KRTYFEDFCS ASNAKTLTVS DKPLSSASSR RSRSSHQTMQ SLRCQVEGCN 180 VDLSGSKDYH RKHRICESHS KCPKVIVGGL ERRFCQQCSR FHKLSEFDEK KRSCRKRLSD 240 HNARRRKPRS EARHFNLDGK QQVGFVFNMP PYHQARPTSS PWETCGSKFT LTRDYYPFSE 300 KRTAGADHHQ YLLGNRISNT ISIQSYNNEG SPSKCATHEF LDDGAGECIT PSNIAAAQDL 360 RSAPSLLSTN GMGSCNSDPV PIYHQPNNVF QQPETRAVLH LASPQMWGSE PHPSDSPAPL 420 VGLQSNLRPY SETFDLSFGE NQQY*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MWDTGSSLQF DWENLVMLDG KGNQVPLKLN SSVWGSDIDG IHLHSHACDF GSINRFSGLD  60
AAHVSSVSSK STSADSSSLG KTSIISVFDE SRSVSIAVDF AKSKNPAAAS SVSVEASGGS  120
VEPVIGLKLG KRTYFEDFCS ASNAKTLTVS DKPLSSASSR RSRSSHQTMQ SLRCQVEGCN  180
VDLSGSKDYH RKHRICESHS KCPKVIVGGL ERRFCQQCSR FHKLSEFDEK KRSCRKRLSD  240
HNARRRKPRS EARHFNLDGK QQVGFVFNMP PYHQARPTSS PWETCGSKFT LTRDYYPFSE  300
KRTAGADHHQ YLLGNRISNT ISIQSYNNEG SPSKCATHEF LDDGAGECIT PSNIAAAQDL  360
RSAPSLLSTN GMGSCNSDPV PIYHQPNNVF QQPETRAVLH LASPQMWGSE PHPSDSPAPL  420
VGLQSNLRPY SETFDLSFGE NQQY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-26	174	247	11	84	squamosa promoter binding protein-like 4

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	246	KKRSCRKRLSDHNARRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	9e-58	squamosa promoter binding protein-like 2

Link Out ? help Back to Top
Phytozome	Kaladp0088s0066.1.p