PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0085s0095.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 973aa MW: 106308 Da PI: 5.9645

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0085s0095.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.3	8e-42	144	220	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk++ Kaladp0085s0095.1.p 144 VCQVEDCGADLSKAKDYHRRHKVCEMHSKASTALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTN 220 6**************************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.1E-34	137	206	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.231	142	219	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.19E-38	143	221	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.8E-30	145	218	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.98E-6	747	856	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.6E-5	753	856	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.23E-5	753	856	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 973 aa Download sequence Send to blast
MEDNVGDQIH QFYGTGSSSL NPMGKRSLEW DLNDWKWDGH LFVASPLNCK PSGYSSRRFL 60 TETGGSSNSS STCSDDVNMG NDAREQELLK LTSAAGGELG ESGNLSLKLG GHGVPTSETE 120 VRNWEGANGK KIRVVGGSSS NRAVCQVEDC GADLSKAKDY HRRHKVCEMH SKASTALVGN 180 VMQRFCQQCS RFHALQEFDE GKRSCRRRLA GHNKRRRKTN PLNVAAGTSN NDDQSNSYLL 240 LTLLKILADL HSNSSDNTKN QDMLSHLLRS LADHTGANGG RNLSEVVSAL PATVQQGLLN 300 SREQLTSAVK EMPQNGSPSA DVSPPPSTLL LIKDSPPGSS VAPSTTAGQI KPNNFDLNDV 360 YVDSDDGTED LEGFRVPANN GTSSPGCPSW IQQDVHNSSP PQVSRNSDSG SAQSPSSSNE 420 GDQIRTDRIV FKLFGKEPGD LPVALRTQIL DWLAHTPTDI ESYIKPGCIV LTIYLRLPES 480 VWDELCLDLS SSLSQLIDVS EESFWSTGWV YVRVQDQVAF IDNGQVVLDT TLPYISSASR 540 ILSVRPIAIP ISEKASFSIK GCNLFPPNSR LLCALEGQYL AQENIPESQE EFSGHNDSDK 600 LQILNYSCSI PAIIGRGFVE VEDNGLGSDF FPFIVAETDI CCEIRTLEST LESTETDETS 660 GNGEPDARTK AIDFIQEMGW LLRRSQQRLQ LGYSNQKAEE LFHFDRLKWL MEFALDHGWC 720 AVVKKLLDTL CSGAVGSGEH DSLVVAVADM GILHRAVRRN SKPLVELLLR YVHEGTSNNM 780 RMKGGGLLFT PDAMGPAGLT PLHIAAGRDG AEAVIDALTD DPNKVGIVAW KSARDSTGAS 840 PEDYARLRGH YSYIHLVQRK TSKKLYTPSH VVLDIPSTLS DSKPNKTETA TQKSSFQISK 900 FAMRTGQGPC KICDQKLIYR TVNTSLAYKP AVLSMVAVAA VCVCVALLFK SCPEVLYVLS 960 PFRWENLEYR SS*

Sequence ? help Back to Top

Protein Sequence Length: 973 aa Download sequence Send to blast

MEDNVGDQIH QFYGTGSSSL NPMGKRSLEW DLNDWKWDGH LFVASPLNCK PSGYSSRRFL  60
TETGGSSNSS STCSDDVNMG NDAREQELLK LTSAAGGELG ESGNLSLKLG GHGVPTSETE  120
VRNWEGANGK KIRVVGGSSS NRAVCQVEDC GADLSKAKDY HRRHKVCEMH SKASTALVGN  180
VMQRFCQQCS RFHALQEFDE GKRSCRRRLA GHNKRRRKTN PLNVAAGTSN NDDQSNSYLL  240
LTLLKILADL HSNSSDNTKN QDMLSHLLRS LADHTGANGG RNLSEVVSAL PATVQQGLLN  300
SREQLTSAVK EMPQNGSPSA DVSPPPSTLL LIKDSPPGSS VAPSTTAGQI KPNNFDLNDV  360
YVDSDDGTED LEGFRVPANN GTSSPGCPSW IQQDVHNSSP PQVSRNSDSG SAQSPSSSNE  420
GDQIRTDRIV FKLFGKEPGD LPVALRTQIL DWLAHTPTDI ESYIKPGCIV LTIYLRLPES  480
VWDELCLDLS SSLSQLIDVS EESFWSTGWV YVRVQDQVAF IDNGQVVLDT TLPYISSASR  540
ILSVRPIAIP ISEKASFSIK GCNLFPPNSR LLCALEGQYL AQENIPESQE EFSGHNDSDK  600
LQILNYSCSI PAIIGRGFVE VEDNGLGSDF FPFIVAETDI CCEIRTLEST LESTETDETS  660
GNGEPDARTK AIDFIQEMGW LLRRSQQRLQ LGYSNQKAEE LFHFDRLKWL MEFALDHGWC  720
AVVKKLLDTL CSGAVGSGEH DSLVVAVADM GILHRAVRRN SKPLVELLLR YVHEGTSNNM  780
RMKGGGLLFT PDAMGPAGLT PLHIAAGRDG AEAVIDALTD DPNKVGIVAW KSARDSTGAS  840
PEDYARLRGH YSYIHLVQRK TSKKLYTPSH VVLDIPSTLS DSKPNKTETA TQKSSFQISK  900
FAMRTGQGPC KICDQKLIYR TVNTSLAYKP AVLSMVAVAA VCVCVALLFK SCPEVLYVLS  960
PFRWENLEYR SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-34	139	218	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021664715.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	F6HZE3	0.0	F6HZE3_VITVI; Uncharacterized protein
STRING	VIT_07s0005g02260.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	Kaladp0085s0095.1.p

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]