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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0083s0068.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 24284 Da PI: 4.94 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.1 | 1.1e-36 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+++Cv+ pyf ++ + +fa+vhk+FGasnv+kll ++p ++r++a+ ++ yeA ar+ dPv G+v++i +l+qq+++ Kaladp0083s0068.1.p 7 SCGACKFLRRKCTSECVFVPYFSYDEaATHFAAVHKVFGASNVSKLLMHIPVQHRSEAAVTISYEALARMTDPVFGCVAHIYALHQQIAN 96 6**********************988689************************************************************* PP DUF260 90 lkaelallkee 100 l++e++ll+++ Kaladp0083s0068.1.p 97 LQEEIDLLGSQ 107 *****998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.498 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-35 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MTGQGSSCGA CKFLRRKCTS ECVFVPYFSY DEAATHFAAV HKVFGASNVS KLLMHIPVQH 60 RSEAAVTISY EALARMTDPV FGCVAHIYAL HQQIANLQEE IDLLGSQMAA GFPFTFPGSQ 120 PATENLSTNQ EAFNLQQQMG HHQQAQDIVN AGYGNGAADQ SYVNQFQQLP PVWGGEAHSG 180 NYDNYLNGEI NEGLDHEPLL CCQFLNNNGN ITEIPNNAVL GW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-32 | 3 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-32 | 3 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010067432.1 | 3e-67 | PREDICTED: LOB domain-containing protein 29 | ||||
Refseq | XP_021625564.1 | 2e-67 | LOB domain-containing protein 33-like | ||||
TrEMBL | A0A059BH53 | 6e-66 | A0A059BH53_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A2C9V4S7 | 4e-66 | A0A2C9V4S7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_027792m | 7e-67 | (Manihot esculenta) | ||||
STRING | XP_010067432.1 | 1e-66 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-57 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0083s0068.1.p |