![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0081s0319.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 600aa MW: 65538.5 Da PI: 6.6307 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.3 | 3.6e-28 | 201 | 254 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl Kaladp0081s0319.1.p 201 KPRVVWSIELHRKFVAAVNHL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 254 79*******************.********************************8 PP | |||||||
2 | Response_reg | 71.6 | 3.2e-24 | 20 | 126 | 1 | 107 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+p+ + ll+ +l+k +y +v++ +++ +al+ll++ + +Dl++ D+ mp+mdG++ll++ e lp+i+++a+g+++++ + Kaladp0081s0319.1.p 20 VLAVDDDPTCLLLLEGLLRKCKY-HVTTRTHAIAALNLLRDDNnrFDLVISDVHMPDMDGFKLLEQVGLEM-GLPVIMLSAYGDPKLVMK 107 799********************.***************777667**********************6644.8***************** PP HHHTTESEEEESS--HHHH CS Response_reg 89 alkaGakdflsKpfdpeel 107 + Ga d+l Kp+ +eel Kaladp0081s0319.1.p 108 GITHGACDYLLKPVRIEEL 126 *****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.42E-35 | 17 | 142 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.6E-40 | 17 | 181 | No hit | No description |
SMART | SM00448 | 1.1E-29 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.591 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-21 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.43E-22 | 21 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-29 | 198 | 259 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.118 | 198 | 257 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-19 | 199 | 258 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-25 | 201 | 254 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.7E-6 | 203 | 253 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 600 aa Download sequence Send to blast |
MTIEQRIEEP ADQFPVGMRV LAVDDDPTCL LLLEGLLRKC KYHVTTRTHA IAALNLLRDD 60 NNRFDLVISD VHMPDMDGFK LLEQVGLEMG LPVIMLSAYG DPKLVMKGIT HGACDYLLKP 120 VRIEELQIIW QHVIRKKRVD PKDHKSADNT HYGNTEAGQA GAGNGYPDQK SNKKRKDQVE 180 DEDEDHDDNE LENDDPSAQK KPRVVWSIEL HRKFVAAVNH LGIDKAVPKR ILELMNVEKL 240 TRENVASHLQ KYRLYLRRIS CVQSQQANMA AAFGTTDPAS YLRVNGMGGF NSLSGSPQFQ 300 NSAAFRSFQP NGMLGRLNSP ASLGGIQRLP SQFSGFSEQG VTLIPGNSTG CILKGMPMPM 360 PTSFELDQLQ DSNNRNATAK VDDLAVFPVT SGLPDVKKTA AGGLSGPHLP PPTSTLMLEG 420 HPVQSHSRVG IGNQSAAVFG SLTPDLSSHF SDRARGSDNW PVAIQSSTGH SDSYASYSGP 480 QHVNSHLDDG ASVTELPLSV TDYQYGSHSD IKPTWDSFAT AAAPIYSSSH STTVAYTNLR 540 RVTNARSEFH AIEANYTVEN SATSAPSANF KRGYPNKPQT YQLPNSVGSL EDLVSSMMK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-26 | 197 | 260 | 1 | 64 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023883435.1 | 1e-179 | two-component response regulator ARR12-like | ||||
TrEMBL | B9RNX8 | 1e-170 | B9RNX8_RICCO; Two-component response regulator | ||||
STRING | XP_002515447.1 | 1e-171 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-127 | response regulator 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0081s0319.1.p |