PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0079s0080.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 699aa    MW: 77827.5 Da    PI: 6.0139
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0079s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS400.41.8e-1223096832374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          v  L++c+ea+ s++  ++++++a+l +lasp+g +p+ Rl+ayfte+La r +r +++l++  +p++ +    +e+ ++++l++++sPi
  Kaladp0079s0080.1.p 309 VGDLIDCVEAIGSKNILAINHFIAKLGDLASPRGrTPIVRLVAYFTEGLAIRTSRIWPNLFHLATPRDLD-LADDEHGTSFRLLNQISPI 397
                          5689******************************99*************************999999987.6788999999********* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          +kf h+  N+ +l+a+eg+++vHiiDfdi+qGlQWp+++q+LasR+++p ++RiTgvg+    sk+el+etg+rLa fA ++++pfef++
  Kaladp0079s0080.1.p 398 PKFIHFSSNEILLRAFEGKQKVHIIDFDIKQGLQWPSFFQSLASRSRPPIHVRITGVGE----SKHELNETGDRLAGFAGAMNLPFEFHP 483
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           v++rled++l++L+vk+gE++aVn+++qlh++l +s   +   +++L l++s++P+vvv++eqea++n +s+ +r++++l+yysa+fds
  Kaladp0079s0080.1.p 484 -VVDRLEDVRLWMLHVKEGESVAVNCMFQLHKTLYDSSGGAL--RDLLGLIRSTNPTVVVMAEQEASTNFQSLDTRVCNSLKYYSAIFDS 570
                          .7*******************************966655444..89******************************************** PP

                 GRAS 271 leaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..... 354
                          l+ +lp+ s  +rik E++ +grei+n++aceg+er erhet+ kW++ +++ GF+++++se++  q+++ll++++++ ++v+ +     
  Kaladp0079s0080.1.p 571 LHCSLPSPSaPARIKTEEM-FGREIRNIIACEGSERYERHETFTKWKKLMSDGGFTSMRISEREILQIQMLLKMYSFHRFSVKTQsdeee 659
                          *******9999*******9.********************************************************888***94444556 PP

                 GRAS 355 ....sgslvlgWkdrpLvsvSaWr 374
                                +l+l W+d+pL++vSaW+
  Kaladp0079s0080.1.p 660 egapATALTLSWEDEPLYTVSAWT 683
                          677778899**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.138282654IPR005202Transcription factor GRAS
PfamPF035146.1E-120309683IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRIE ASKQFQACHF PLTNSMSTQR LDMQCSFPRR EAAISQPIRP  60
VGISVDQKPI ESRAGSCSLK QQNIHLPPLA TRPRLSLRGR RETEGGIWAE GNNLKRFAER  120
SPVDRSKKVK RKRGSSSKDV EQSEGAVEGD DDDDDDDASG LRLGQLDGRS FWFQSGFEVS  180
SYLPGLSQPE APFSLTVSQD EDRVCFVPSE VISPPPLPLT NNPWIDFGVS KITHLGDKNV  240
ETSHRQPAVR EPSESRTSYE SSLSLRLNEN PPPVHDSGNG SGNPHPLEGT PAQVVDESDE  300
EEQLGFELVG DLIDCVEAIG SKNILAINHF IAKLGDLASP RGRTPIVRLV AYFTEGLAIR  360
TSRIWPNLFH LATPRDLDLA DDEHGTSFRL LNQISPIPKF IHFSSNEILL RAFEGKQKVH  420
IIDFDIKQGL QWPSFFQSLA SRSRPPIHVR ITGVGESKHE LNETGDRLAG FAGAMNLPFE  480
FHPVVDRLED VRLWMLHVKE GESVAVNCMF QLHKTLYDSS GGALRDLLGL IRSTNPTVVV  540
MAEQEASTNF QSLDTRVCNS LKYYSAIFDS LHCSLPSPSA PARIKTEEMF GREIRNIIAC  600
EGSERYERHE TFTKWKKLMS DGGFTSMRIS EREILQIQML LKMYSFHRFS VKTQSDEEEE  660
GAPATALTLS WEDEPLYTVS AWTPTDAPGA SSSFSQRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-6031568426380Protein SCARECROW
5b3h_A8e-6031568425379Protein SCARECROW
5b3h_D8e-6031568425379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017972132.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A061G6280.0A0A061G628_THECC; GRAS family transcription factor
STRINGEOY246320.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein