PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0070s0105.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRAS

Protein Properties

Length: 669aa MW: 74743 Da PI: 5.2287

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0070s0105.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	366.2	4.5e-112	292	662	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l+e+L +cA+av+s d + a++lL ++++++sp+gd++qRla+yf++ L+arl++s+++l++ ++ ++ + ++ l+a+kl++ +P+ Kaladp0070s0105.1.p 292 LREVLSQCAQAVASYDVRTATELLGKIRQQSSPYGDANQRLAHYFANSLEARLVGSSTHLFSLVRLRAPA----ADILKAYKLYVTSCPF 377 6789*******************************************************999999996....9*********** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k+s++ aN+ + + + +++ +HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rLak++++++vpfe+ Kaladp0070s0105.1.p 378 KKISNVYANRLVDKLAVKATSLHIIDFGILYGFQWPCLIQRLSQRPGGPPRLRITGIDLPQPGfrPSERVEETGDRLAKYCKKFNVPFEY 467 **********************************************************9*********************** PP GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 ++ +a+++e+++le+L++ +++++Vn+ ++l +l+de+vs++++rd+vLkl+++++P++++ + + ++++ Fl+rf e+l ++sal Kaladp0070s0105.1.p 468 TP-IAQKWESIKLEDLNLGDrHDMVVVNCLYRLRNLPDETVSVTNPRDTVLKLIRKINPDIFIQAAVNGTYDAPFFLTRFRETLFHFSAL 556 .7***********9877***************************************************************** PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 +d +ea++p+e++er +E+e+lgr+++n++aceg++r+ r et+++W++r+++aGF+++pl+++ +k +++ +r+ + + + v+e++++ Kaladp0070s0105.1.p 557 YDIFEATVPSENQERLLYEKEVLGRDAMNIIACEGSQRIDRPETYRRWQSRIRRAGFSQLPLDQDLMKLVRSKVRREYHKDFVVDEDKQW 646 **************************************************************************888***** PP GRAS 358 lvlgWkdrpLvsvSaW 373 l++gWk+r L+++++W Kaladp0070s0105.1.p 647 LLQGWKGRILYALTVW 662 ************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.266	266	643	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-109	292	662	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MEAAALMDPP IDFGFKTAAG LPCSKQILVN GYKLGGNMTP GDSGFSVDVG EYLVDAESPP 60 YWNPGAGSGS GSSSPDGDEA EHDSNATLKF INDILMEEDW DGKKCMFQDC MGALQAAEKS 120 FSDALYGHDQ PGHAASGFDP GLAAGSTVSE PFEHSGSFSV VGIESSVSSS GTYSQAEVSF 180 SEIFEQEAWR LDGINTSTAE MANRRGMGGR QRDRDGDDDC GEEGRRSKYS ATSPEESSPA 240 VEDEEVDDRF LLCDKDGECN ALERLIPQAS EKKVNRRNPS KKGEKKQQVV DLREVLSQCA 300 QAVASYDVRT ATELLGKIRQ QSSPYGDANQ RLAHYFANSL EARLVGSSTH LFSLVRLRAP 360 AADILKAYKL YVTSCPFKKI SNVYANRLVD KLAVKATSLH IIDFGILYGF QWPCLIQRLS 420 QRPGGPPRLR ITGIDLPQPG FRPSERVEET GDRLAKYCKK FNVPFEYTPI AQKWESIKLE 480 DLNLGDRHDM VVVNCLYRLR NLPDETVSVT NPRDTVLKLI RKINPDIFIQ AAVNGTYDAP 540 FFLTRFRETL FHFSALYDIF EATVPSENQE RLLYEKEVLG RDAMNIIACE GSQRIDRPET 600 YRRWQSRIRR AGFSQLPLDQ DLMKLVRSKV RREYHKDFVV DEDKQWLLQG WKGRILYALT 660 VWIPTSQD*

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MEAAALMDPP IDFGFKTAAG LPCSKQILVN GYKLGGNMTP GDSGFSVDVG EYLVDAESPP  60
YWNPGAGSGS GSSSPDGDEA EHDSNATLKF INDILMEEDW DGKKCMFQDC MGALQAAEKS  120
FSDALYGHDQ PGHAASGFDP GLAAGSTVSE PFEHSGSFSV VGIESSVSSS GTYSQAEVSF  180
SEIFEQEAWR LDGINTSTAE MANRRGMGGR QRDRDGDDDC GEEGRRSKYS ATSPEESSPA  240
VEDEEVDDRF LLCDKDGECN ALERLIPQAS EKKVNRRNPS KKGEKKQQVV DLREVLSQCA  300
QAVASYDVRT ATELLGKIRQ QSSPYGDANQ RLAHYFANSL EARLVGSSTH LFSLVRLRAP  360
AADILKAYKL YVTSCPFKKI SNVYANRLVD KLAVKATSLH IIDFGILYGF QWPCLIQRLS  420
QRPGGPPRLR ITGIDLPQPG FRPSERVEET GDRLAKYCKK FNVPFEYTPI AQKWESIKLE  480
DLNLGDRHDM VVVNCLYRLR NLPDETVSVT NPRDTVLKLI RKINPDIFIQ AAVNGTYDAP  540
FFLTRFRETL FHFSALYDIF EATVPSENQE RLLYEKEVLG RDAMNIIACE GSQRIDRPET  600
YRRWQSRIRR AGFSQLPLDQ DLMKLVRSKV RREYHKDFVV DEDKQWLLQG WKGRILYALT  660
VWIPTSQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-49	298	666	24	381	Protein SCARECROW
5b3h_D	2e-49	298	666	24	381	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002533749.1	0.0	scarecrow-like protein 14
Refseq	XP_023897035.1	0.0	scarecrow-like protein 30
Swissprot	Q9XE58	1e-166	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	B9T680	0.0	B9T680_RICCO; Transcription factor, putative
STRING	XP_002533749.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-165	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Kaladp0070s0105.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]