PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0067s0141.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 429aa    MW: 48011.1 Da    PI: 6.1933
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0067s0141.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2906.5e-89434223374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL++cA+a+s++d +++++lL+ l+elasp+gd  q+la++f++ L  + ++s+++ y++l + ++++++ +++ +    f+evsP+ +
  Kaladp0067s0141.1.p  43 RLLMDCARAISQKDSSKIHHLLWMLNELASPYGDCEQKLASCFLQVLFCKATESGQRSYRTLMSVAAKTYSFDSARKLILKFQEVSPWTT 132
                          79************************************************************9999997776666666666********* PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                          f+h++ N  Ilea++ge+++HiiD++ + ++QWp+Ll+aLa+R+ +++p+l++T+v+  ++  k  ++ + +r++kfA+ +gvpfef+++
  Kaladp0067s0141.1.p 133 FGHVASNGSILEALDGESKLHIIDMSNTLCTQWPTLLEALATRNaQETPHLKLTVVVT-DKMVKPVMKDVSQRMEKFARLMGVPFEFKAI 221
                          ********************************************8899*********9.6789**************************9 PP

                 GRAS 182 .vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalf 268
                             + l +l+ ++L +k gEa+aVn+  +l r       + + r ++++++ sl+Pkvv++ve+ead   ++++F++ f e+l+++   f
  Kaladp0067s0141.1.p 222 tELNCLGELTKDQLGIKDGEAVAVNCNGALRRAD-----VGK-RGSLIDMIGSLQPKVVTIVEEEADFtsTRGDFVKCFEECLNFFILYF 305
                          4455999***********************9996.....333.778*******************999545669**************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.. 352
                          ++le+++ ++s+er ++Ere  +r+iv +++c  +     + er+e+ ++W++rl+ a + p+++s+++++++k+ll+++   g++++  
  Kaladp0067s0141.1.p 306 ETLEESFIPTSNERLMLERE-CSRHIVGILSCDDEIddhgQCERRERGAQWSKRLR-ASLAPITFSDDVTDDVKALLKRYR-TGWNLKvs 392
                          ********************.89*********8653223478************96.67**********************.55555533 PP

                 GRAS 353 ee........sgslvlgWkdrpLvsvSaWr 374
                          ++         + ++l Wk++pLv++SaW+
  Kaladp0067s0141.1.p 393 QKssdvdetsPAGIYLLWKEQPLVWASAWK 422
                          334555555345566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.45515393IPR005202Transcription factor GRAS
PfamPF035142.2E-8643422IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MLLDTTLAGG LQSLAMQNNN GQLPGRSLEF SIEPCDTGKW AARLLMDCAR AISQKDSSKI  60
HHLLWMLNEL ASPYGDCEQK LASCFLQVLF CKATESGQRS YRTLMSVAAK TYSFDSARKL  120
ILKFQEVSPW TTFGHVASNG SILEALDGES KLHIIDMSNT LCTQWPTLLE ALATRNAQET  180
PHLKLTVVVT DKMVKPVMKD VSQRMEKFAR LMGVPFEFKA ITELNCLGEL TKDQLGIKDG  240
EAVAVNCNGA LRRADVGKRG SLIDMIGSLQ PKVVTIVEEE ADFTSTRGDF VKCFEECLNF  300
FILYFETLEE SFIPTSNERL MLERECSRHI VGILSCDDEI DDHGQCERRE RGAQWSKRLR  360
ASLAPITFSD DVTDDVKALL KRYRTGWNLK VSQKSSDVDE TSPAGIYLLW KEQPLVWASA  420
WKSQPAKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-1302742277473Protein SHORT-ROOT
5b3h_B1e-1312742223419Protein SHORT-ROOT
5b3h_E1e-1312742223419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022760991.10.0protein SHORT-ROOT-like
SwissprotA2YN561e-133SHR1_ORYSI; Protein SHORT-ROOT 1
TrEMBLB9HGY90.0B9HGY9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-133GRAS family protein