PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0066s0004.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 494aa    MW: 55631.5 Da    PI: 6.4278
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0066s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.21.8e-871214914374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPi 90 
                           L++ Ae v+ +++++a++lL+    l+s +g+++qRl+ yf eAL++r+ r+  + ++   +++ + +  + +++++ +    +   P+
  Kaladp0066s0004.1.p 121 CLFSTAESVALEQFARATKLLNYCDVLSSCNGNTVQRLVRYFSEALRERIDRQRGNFSSEGLSKQPKIDVKDASVSSHPViltCHRKIPF 210
                          6999************************************************777777766666655444333333333333488999** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                           +  hl+  qaI e v+ ++rvH++Df++  G+ W  ++qaL+sR+ +p   l++T+vgs  + sk e+e tg+rL+ fA+ l++pf f+
  Kaladp0066s0004.1.p 211 TRTLHLAGIQAIIENVADAKRVHVVDFGVRFGVCWTIFMQALTSREFPPLeILKLTAVGS-GTMSKSEIEDTGNRLSAFAQGLNIPFTFS 299
                          **********************************************665549********.667************************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          +++++++ +l+ e ++v+++Ea+a   ++ l ++l    +++++ + v+ +++s++P+++v++e+ea++n++ F +rf+eal yysa+fd
  Kaladp0066s0004.1.p 300 IVMVDDMLNLSEELFEVEHDEAVAFYASYLLRTML----CVPDRLEYVMTVIRSINPRIMVMIESEANTNAPCFGRRFTEALFYYSACFD 385
                          *****************************999998....66666777******************************************* PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
                          +le+ + + + +ri++E    +++i+n++a+eg++r+ rh +l+ Wr  + ++GF++ +ls +   +a+++l+++  ++  +++ e +sl
  Kaladp0066s0004.1.p 386 CLETCMTSSDPDRIFIESLHCRQAIRNILATEGEMRTTRHVKLSVWRTFFARFGFSETRLSRSSLHEANSMLKEFTtGRYCNLDMEGKSL 475
                          ****************************************************************************88889********* PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          ++gWk+ p+vsvSaW+
  Kaladp0066s0004.1.p 476 TIGWKGTPMVSVSAWK 491
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.34592470IPR005202Transcription factor GRAS
PfamPF035146.4E-85121491IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MKRYKKGDKS GKNPNVVEEG DVEFISFLMS EIPESCRNQL LRSQEDIVSQ PGIDPISVKM  60
DDKSLTAVEV FRVAGERFIR EKFIQSSSSG EGDPCRFRHS ADVYYSGSSA EQVNDAELAG  120
CLFSTAESVA LEQFARATKL LNYCDVLSSC NGNTVQRLVR YFSEALRERI DRQRGNFSSE  180
GLSKQPKIDV KDASVSSHPV ILTCHRKIPF TRTLHLAGIQ AIIENVADAK RVHVVDFGVR  240
FGVCWTIFMQ ALTSREFPPL EILKLTAVGS GTMSKSEIED TGNRLSAFAQ GLNIPFTFSI  300
VMVDDMLNLS EELFEVEHDE AVAFYASYLL RTMLCVPDRL EYVMTVIRSI NPRIMVMIES  360
EANTNAPCFG RRFTEALFYY SACFDCLETC MTSSDPDRIF IESLHCRQAI RNILATEGEM  420
RTTRHVKLSV WRTFFARFGF SETRLSRSSL HEANSMLKEF TTGRYCNLDM EGKSLTIGWK  480
GTPMVSVSAW KFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-3915249137375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-54RGA-like 2