PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0066s0003.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 616aa    MW: 68229.6 Da    PI: 5.1224
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0066s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS279.41.1e-852466136374
                 GRAS   6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kal.ppsetseknsseelaalkl......fsev 87 
                          + +Ae v+ +++e+a++lL++   l+++dg+++qR++ yf eAL++r+ r + +++ k l + ++      +ee+++++       f+  
  Kaladp0066s0003.1.p 246 FLAAEGVAFQQFERATRLLNHCDMLVAQDGSTVQRVVYYFSEALRERIDRISGNCSlKGLgKLQDF----NIEEAMIMSPnpfclsFHRQ 331
                          6689999*******************************************5444440444233333....3333333322224448**** PP

                 GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                          +P+ + ++++a q Ile v ++++vH+iDf+i+ G+QW  L+qaLa+R       l+iT+v+     sk+++e tg+rLa+fA++l+++f
  Kaladp0066s0003.1.p 332 TPFSQACQFAAVQSILENVGHAKKVHVIDFGIKCGVQWTILMQALATRGaLTLELLKITAVST---ASKQSVEDTGSRLANFAHSLNLTF 418
                          ************************************************9455679********...58********************** PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           f++++++++ +l+ + ++++ +E+ a+ + + l  +l+++  le+    ++++++s++P ++v++e eadhns+ F++rf+eal y+s+
  Kaladp0066s0003.1.p 419 AFSIVMVDDMLNLHEDLIELEDDEVAAIYVPFVLRAFLSKPDRLEH----MMSVIRSIQPCMIVMIEVEADHNSPAFANRFTEALFYFSS 504
                          **************************************66666666....**************************************** PP

                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355
                           fd+l++ ++  + +r+ +E +++++ i+n++a+ega+r+ r  + e Wr+ ++++ + +++ls++   qa+l+l++++ +   ++e + 
  Kaladp0066s0003.1.p 505 YFDCLATCMGDSNPNRKIIESVYFSQGIRNIIATEGAARTVRSVKIEVWRAFFTRFQLVEAELSSSSLYQARLILKEFNcGSCCTLEMHG 594
                          *******************************************************************************9999******* PP

                 GRAS 356 gslvlgWkdrpLvsvSaWr 374
                          +s++l W++ p++s+SaW+
  Kaladp0066s0003.1.p 595 KSFILEWNGTPIMSLSAWK 613
                          ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.276215592IPR005202Transcription factor GRAS
PfamPF035143.7E-83246613IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MHFLCDFVDS ICVYGFTTTI CSRQTLFGSG VGVGYSSSDY IQNVGVGSKG SENRRDGFEG  60
NKEFSFVFDS LGMEFYDSGM ENENTGKGGT GIISSAEQRS ASQIGDCGDF GNVRMSGSSS  120
CVKIFEEDIA SMETISGGGI DILEHEKERG QRSGFASLEL LKNYGSGFKR LHREVISQPS  180
LVPPCRKVVR EDLSTAEIFR VAGEMFIQSS SQGVSDRSVG SHLTDLHFCS ISEEQIKDVQ  240
LAMSIFLAAE GVAFQQFERA TRLLNHCDML VAQDGSTVQR VVYYFSEALR ERIDRISGNC  300
SLKGLGKLQD FNIEEAMIMS PNPFCLSFHR QTPFSQACQF AAVQSILENV GHAKKVHVID  360
FGIKCGVQWT ILMQALATRG ALTLELLKIT AVSTASKQSV EDTGSRLANF AHSLNLTFAF  420
SIVMVDDMLN LHEDLIELED DEVAAIYVPF VLRAFLSKPD RLEHMMSVIR SIQPCMIVMI  480
EVEADHNSPA FANRFTEALF YFSSYFDCLA TCMGDSNPNR KIIESVYFSQ GIRNIIATEG  540
AARTVRSVKI EVWRAFFTRF QLVEAELSSS SLYQARLILK EFNCGSCCTL EMHGKSFILE  600
WNGTPIMSLS AWKFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3427561337375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811562.11e-179PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2I4DWN41e-177A0A2I4DWN4_JUGRE; DELLA protein RGL1-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.16e-50GRAS family protein