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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0060s0149.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 350aa MW: 38380.8 Da PI: 5.757 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.8 | 6.7e-42 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk++rrkC+++C++apyfp e+p+kf nvhk+FG snv+k+l++l++ +reda++sl++eAear+rdP+yG+vg+i+ lqq+l+q Kaladp0060s0149.1.p 6 PCAACKFQRRKCTPECIFAPYFPPEDPQKFVNVHKVFGGSNVSKILSDLNPAQREDAAKSLAFEAEARLRDPIYGCVGFISYLQQRLKQI 95 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +++l +++e Kaladp0060s0149.1.p 96 QVDLTNARKE 105 ****999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.106 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-41 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MSSNSPCAAC KFQRRKCTPE CIFAPYFPPE DPQKFVNVHK VFGGSNVSKI LSDLNPAQRE 60 DAAKSLAFEA EARLRDPIYG CVGFISYLQQ RLKQIQVDLT NARKELSSYI GPSAMLPTLP 120 QHAYGQMVYH PQQQQMMGNQ LSSSSTFPYT NLMGTPAVYG PGTSQQLVIR EQQQQQIIGG 180 GNPTSSAAAL PYTSLMPSMI GDGGSSQPLL IREPQQLHGV DPQQYGAVDA AEQHEMIRNY 240 EQQQQDYFLL RSSDQYEPGG GQILGSGFIQ MAADETGGGP SLALGVNYDN PYSQVQQQQQ 300 QEVVHQSLQA QLVLQSRQQH AEHVLQTPLH QHPQNNADSN EGRSADPSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-46 | 3 | 109 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-46 | 3 | 109 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-58 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0060s0149.1.p |