PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0354.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 577aa    MW: 64060.3 Da    PI: 5.702
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0354.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.76.3e-882075744374
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevs 88 
                           Ll++Ae v ++++e+a++lL++ + l+spd+ ++qR+++yfteAL++r+ r +++ +++ ++ +++ + n  e++++ +     f++  
  Kaladp0059s0354.1.p 207 SLLSAAESVGNQQFERASRLLSQCEFLSSPDACTVQRVVHYFTEALRERIDReTGNFTSNYFKEKQACDLN--EAMKYGNPitlsFYQDI 294
                          699*************************************************4455555555555555433..333322214457***** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          P+ + sh+t  qaI+e v++++++H iDf++ +G++   L+qaLa+R e   +l+iT+v     +s+ +le tg rL +fA+++++p++f
  Kaladp0059s0354.1.p 295 PLSQASHFTGIQAIVEHVATAKKIHMIDFGLRHGVHSTILMQALAARHEAVEHLKITAVTT---TSRSKLEPTGTRLLSFARTMKIPLSF 381
                          ************************************************************9...689*********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++++  ++ dl+ e ++++ +E ++V   l + +l+    +++++ d++++++k+l P ++v++e ea+hns+ F++rf+eal +ysa f
  Kaladp0059s0354.1.p 382 DIVMIGDMLDLREELFELDGEEEVVVYAPLLMTTLV----AQRDRLDHLMSVLKNLDPCLMVMAEVEANHNSPAFVNRFIEALFFYSAYF 467
                          ***999************************888887....55556777****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          d l++ + +++  ri  E ++++r i+n+va+ega+r+ rh + + Wr+ + ++G+ + ++s  a+ qa+l+l +++ +   +++ + +s
  Kaladp0059s0354.1.p 468 DFLASCMENDNPGRIAAETVFFSRCIRNIVATEGADRTTRHVKIGVWRSYFARFGLVETEFSAAATYQARLVLDQFScGSSCTIDTDGKS 557
                          *****************************************************************************9999********* PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l++gWk+ pL s+S W+
  Kaladp0059s0354.1.p 558 LIMGWKGTPLHSLSIWK 574
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.066178553IPR005202Transcription factor GRAS
PfamPF035142.2E-85207574IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MLRDEQYHQS GSHERLISFK GNKGSPKQYR EEEDGRNSGA ADPGSSNLGS LGEGLSSSKY  60
LQQHQQVSNG YGFFDDVNFD VDSPPVQQCF DEMSKLSKLH SETPAVEPRK EAGSSVQYAS  120
LELLNSYGSG VKRLSELRPS PSQARVESSW TRPKLSIDEI LKTAAVNFIS SSSHGVDGSP  180
ILSGAAHGVY FSGLTDDQMT DVELLVSLLS AAESVGNQQF ERASRLLSQC EFLSSPDACT  240
VQRVVHYFTE ALRERIDRET GNFTSNYFKE KQACDLNEAM KYGNPITLSF YQDIPLSQAS  300
HFTGIQAIVE HVATAKKIHM IDFGLRHGVH STILMQALAA RHEAVEHLKI TAVTTTSRSK  360
LEPTGTRLLS FARTMKIPLS FDIVMIGDML DLREELFELD GEEEVVVYAP LLMTTLVAQR  420
DRLDHLMSVL KNLDPCLMVM AEVEANHNSP AFVNRFIEAL FFYSAYFDFL ASCMENDNPG  480
RIAAETVFFS RCIRNIVATE GADRTTRHVK IGVWRSYFAR FGLVETEFSA AATYQARLVL  540
DQFSCGSSCT IDTDGKSLIM GWKGTPLHSL SIWKFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3621257327378Protein SCARECROW
5b3h_A2e-3621257326377Protein SCARECROW
5b3h_D2e-3621257326377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419398.10.0DELLA protein RGL1
RefseqXP_006488851.10.0DELLA protein RGL1-like
TrEMBLA0A2H5N6800.0A0A2H5N680_CITUN; Uncharacterized protein
TrEMBLV4RFL40.0V4RFL4_9ROSI; Uncharacterized protein
STRINGXP_006488851.10.0(Citrus sinensis)
STRINGXP_006419398.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-44RGA-like 1