PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0059s0271.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 577aa    MW: 62946 Da    PI: 4.7567
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0059s0271.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.28.2e-1392105691374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv++L++cA+a+++++le a +l++++  la++++ +m+++a+yf+eAL++r+++        ++p+e+   n s +   l  f+e++P+
  Kaladp0059s0271.1.p 210 LVHTLMACAQAIQQSKLEVAGTLVNQIGLLAASQAGSMRKVATYFAEALERRIFN--------CHPQESV--NPSFTDLLLMNFYEACPY 289
                          689***************************************************9........3344443..33333334446******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lkf+h+taNqaIlea++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+e+g rLa++Ae+++v+fef+ 
  Kaladp0059s0271.1.p 290 LKFAHFTANQAILEAFSGKKEVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPSPDNTDRLREVGLRLAQLAETIHVDFEFRG 379
                          ****************************************************************************************** PP

                 GRAS 181 lvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +va++l+dl+ ++L+++p   E++aVn+v++lhrll++++++e+    vL+++++++P++v+vveqea+hn++ Fl+rf+e+l+yys+lf
  Kaladp0059s0271.1.p 380 FVANSLADLDASKLELNPsdTESIAVNSVFELHRLLARPGAIEK----VLSVIREIKPEIVTVVEQEANHNGPVFLDRFTESLHYYSTLF 465
                          ******************999***********************....****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          dsle +   +s++++++++++lgr+i+nvvaceg +r+erhetl +Wr r+++aGF+pv+++++a kqa++ll  ++ ++gyrvee++g+
  Kaladp0059s0271.1.p 466 DSLEGS---ASSQDKVISEVYLGRQICNVVACEGPDRVERHETLDQWRLRFGSAGFEPVHIGSNAFKQASMLLDLFSgGEGYRVEENNGC 552
                          ****99...699****************************************************************************** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgW++rpL+++SaWr
  Kaladp0059s0271.1.p 553 LMLGWHTRPLIATSAWR 569
                          ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120413.1E-3540105IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.8E-3340113No hitNo description
PROSITE profilePS5098567.781184548IPR005202Transcription factor GRAS
PfamPF035142.8E-136210569IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MKRENQYLYP NPDSSGAGSS SGGKGKVCWE DDPLPESGMD ELLAVLGYKV KSSDMAEVAQ  60
KLEQLEEVMG SVREDGLSHL ASETVHYNPS DISNWIENML SEFVPAGFDS SLQPLPPASV  120
HSFIPQLDSS ASVNFPGFGG GDTSLPDYDL KAIPGNQIIY SPKQQQQQID ELGGNANKRL  180
KTTVTATEAP LTTSTRPVVL VDSQEAGVRL VHTLMACAQA IQQSKLEVAG TLVNQIGLLA  240
ASQAGSMRKV ATYFAEALER RIFNCHPQES VNPSFTDLLL MNFYEACPYL KFAHFTANQA  300
ILEAFSGKKE VHVIDFSMNQ GMQWPALMQA LALRPGGPPA FRLTGIGPPS PDNTDRLREV  360
GLRLAQLAET IHVDFEFRGF VANSLADLDA SKLELNPSDT ESIAVNSVFE LHRLLARPGA  420
IEKVLSVIRE IKPEIVTVVE QEANHNGPVF LDRFTESLHY YSTLFDSLEG SASSQDKVIS  480
EVYLGRQICN VVACEGPDRV ERHETLDQWR LRFGSAGFEP VHIGSNAFKQ ASMLLDLFSG  540
GEGYRVEENN GCLMLGWHTR PLIATSAWRV GSTGPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6621756826378Protein SCARECROW
5b3h_A6e-6621756825377Protein SCARECROW
5b3h_D6e-6621756825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594609.10.0DELLA protein GAIP-B
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A2C9UFS90.0A0A2C9UFS9_MANES; Uncharacterized protein
STRINGcassava4.1_033968m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein