PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0053s0322.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 703aa    MW: 79400.1 Da    PI: 5.4367
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0053s0322.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS77.91.8e-243134219348
                 GRAS 219 sleserdevLklvkslsPkvvvvveqeadhn.sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae..r 305
                          s++++ +++  +++s++P+ vv++e  a+hn ++sF +rf+eal yy alfd++e+     + +ri+ E  + +++i+n+va+e ++  r
  Kaladp0053s0322.1.p   3 SMPNRLEHMTTVIRSINPHTVVMIEIKANHNyAPSFGNRFAEALFYYNALFDCMETYQKCYEPDRITAESIYCSQAIRNIVAAEAEAeaR 92 
                          677888899999******************62669**********************99999********************98765559 PP

                 GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                          + ++ + + Wr+ ++++G+++ ++s     qa l+l++++  g
  Kaladp0053s0322.1.p  93 TTQRVKISAWRAFFSRFGLSESQISALSLYQATLVLKEYS-CG 134
                          999999********************************98.33 PP
2GRAS236.89.1e-733746984331
                 GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.....fsevs 88 
                           L+++Ae v  ++l++a++lL +   l+s +g+++qR+++yf eAL++++ r++ +l+ +  ++  +   ++ee+ +         ++  
  Kaladp0053s0322.1.p 374 SLFSAAESVVLEQLARATRLLDNCDLLSSCTGSTVQRVVHYFSEALREKIDRQSGRLSMKGLSKLRN--IHIEEACVIPHpvflsCYHRI 461
                          699*************************************************666666444333333..233333333223444578889 PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          P+ +  h++  qaI+e v+ +++vH+iDf +++G+ W  L+qaLasR+ ++   l++T+v     +s+  +e  g+rL++fA+ lg+pf 
  Kaladp0053s0322.1.p 462 PFTQPPHFAGMQAIMENVADSKKVHVIDFRVTYGVCWTILIQALASRDaSPLEYLKLTAVRT---NSNSDIEDAGKRLSDFAQCLGIPFA 548
                          ************************************************555569*******9...5799********************* PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          f+v++++++ +l+ + ++++ +Ea+aV   + l ++l    +++++ d++++++  ++P ++v++e ea++n++ F +rf+eal yysa+
  Kaladp0053s0322.1.p 549 FRVVMVDDMLNLSEDLFELEDDEAVAVYAPYLLRTML----CIPDRLDHMMRVISCINPCIMVMIEVEANTNAPCFGKRFTEALFYYSAF 634
                          *******************************999998....99999******************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                          fd+l++++ + + eri++E    g++i+n++++eg++r+ rh +l+ Wr  + ++G+++ +ls 
  Kaladp0053s0322.1.p 635 FDCLATSMESSDPERIFLESSHCGQDIRNILTTEGEARTTRHVKLSIWRTFFARFGYTETKLSR 698
                          ***********************************************************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.1411141IPR005202Transcription factor GRAS
PfamPF035146.1E-223134IPR005202Transcription factor GRAS
PROSITE profilePS5098539.92345702IPR005202Transcription factor GRAS
PfamPF035143.2E-70374698IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MVSMPNRLEH MTTVIRSINP HTVVMIEIKA NHNYAPSFGN RFAEALFYYN ALFDCMETYQ  60
KCYEPDRITA ESIYCSQAIR NIVAAEAEAE ARTTQRVKIS AWRAFFSRFG LSESQISALS  120
LYQATLVLKE YSCGSSVISS WMEKALLLGG REYPCFFFLL GHLPEHAYPT SLPDKTFECR  180
TSADCHKDEG GGIWGQNEFD EPEACQKPGF VFGSIRDESS DLGNHREEMR KVVLTDQQQR  240
AQVPSSFASL PVQYYLKDRG KMRWTPGENS NNVEKGDTAT FIYQAADIPE LYRSPLQQSH  300
REIVSQSSTD SMCPKTDNKS LTAEEIFKVA GKKFILSSSI EGLEGDPSRF SNQTDIHYSG  360
FSEEQINDVE LAGSLFSAAE SVVLEQLARA TRLLDNCDLL SSCTGSTVQR VVHYFSEALR  420
EKIDRQSGRL SMKGLSKLRN IHIEEACVIP HPVFLSCYHR IPFTQPPHFA GMQAIMENVA  480
DSKKVHVIDF RVTYGVCWTI LIQALASRDA SPLEYLKLTA VRTNSNSDIE DAGKRLSDFA  540
QCLGIPFAFR VVMVDDMLNL SEDLFELEDD EAVAVYAPYL LRTMLCIPDR LDHMMRVISC  600
INPCIMVMIE VEANTNAPCF GKRFTEALFY YSAFFDCLAT SMESSDPERI FLESSHCGQD  660
IRNILTTEGE ARTTRHVKLS IWRTFFARFG YTETKLSRSS LY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3337969726334Protein SCARECROW
5b3h_D2e-3337969726334Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-44RGA-like 1