PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0496.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 488aa    MW: 53607.9 Da    PI: 8.0268
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0496.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS223.78.8e-691064812374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++lL  cA a+++g+++++q+lL  l+el s +gd+++Rla   ++AL +++  + +++++a +  +++        ++l  f+e+sP++
  Kaladp0048s0496.1.p 106 EQLLNPCAAAIAAGNAARVQHLLIVLRELGSATGDANHRLALLGLRALTHHICPTPNTTVSAYTFASAE---PRFFQKSLLKFYELSPWF 192
                          689**************************************************9555555555555544...5555566666******** PP

                 GRAS  92 kfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLak 167
                           f + +aN  Il+ ++++    + +Hi+D+++s+G+QWp+Ll+aL+++p ++pp +RiT++++++ +              ++    L +
  Kaladp0048s0496.1.p 193 IFPNTIANFSILQVLAEAknysRNLHILDIGVSHGVQWPTLLEALSKQPgGPPPLVRITVMAPATDEaeidqtpfaVGPPGHRFSASLLS 282
                          ************9988876666889************************55666********988778888766666666778888899* PP

                 GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                          fA++l++++++n +  + l++l+ + ++ ++ E+l+V+ +++lh+l    ++ ++ r++vLkl+++l+Pk v+++e++ad+ +++F ++ 
  Kaladp0048s0496.1.p 283 FAKTLNINLRINYIENHPLQNLDAQVIDGSELENLIVSAQFRLHSLS---HKAPDDRTRVLKLIRGLNPKAVILSENNADC-GGDFPTGQ 368
                          *************9999*****************************8...77777789***********************.789***** PP

                 GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                          ++ +e++++++ds++a +    + r   Er++++ e+  ++  +  +    +e +++W er++e+GF    l+e++++ a+ llrk++ +
  Kaladp0048s0496.1.p 369 ARRVEFMWKFLDSTSAAF----KGRECEERQVVEGEAGRALVSRRWM----NEGMGRWCERMREVGFAGEGLGEEVVDAARVLLRKYDgN 450
                          **************8776....4555555555555565556555555....8************************************99 PP

                 GRAS 347 dgyrveee...sgslvlgWkdrpLvsvSaWr 374
                          +++rv e+    g++ + Wk+ p+ ++S W+
  Kaladp0048s0496.1.p 451 WEMRVGEDdggGGCVGIWWKGLPVSFCSLWK 481
                          99****9955445666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.28279457IPR005202Transcription factor GRAS
PfamPF035143.0E-66106481IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MVYEEDQQMM MQTSSNSIYN TITTTTDSAF LDDVILPDFS PSQAFEPTRK RKSADDPAPK  60
PAQARKGDGR NRSLVAKKQT GGKKKPSRSH GSNSSCGNGK DGRWAEQLLN PCAAAIAAGN  120
AARVQHLLIV LRELGSATGD ANHRLALLGL RALTHHICPT PNTTVSAYTF ASAEPRFFQK  180
SLLKFYELSP WFIFPNTIAN FSILQVLAEA KNYSRNLHIL DIGVSHGVQW PTLLEALSKQ  240
PGGPPPLVRI TVMAPATDEA EIDQTPFAVG PPGHRFSASL LSFAKTLNIN LRINYIENHP  300
LQNLDAQVID GSELENLIVS AQFRLHSLSH KAPDDRTRVL KLIRGLNPKA VILSENNADC  360
GGDFPTGQAR RVEFMWKFLD STSAAFKGRE CEERQVVEGE AGRALVSRRW MNEGMGRWCE  420
RMREVGFAGE GLGEEVVDAA RVLLRKYDGN WEMRVGEDDG GGGCVGIWWK GLPVSFCSLW  480
KLAPVID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-3310148183473Protein SHORT-ROOT
5b3h_B5e-3410148129419Protein SHORT-ROOT
5b3h_E5e-3410148129419Protein SHORT-ROOT
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14752TRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273108.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC81e-179NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLF6HXW00.0F6HXW0_VITVI; Uncharacterized protein
STRINGVIT_09s0002g01190.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-137GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]