PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0047s0108.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 530aa    MW: 59172.1 Da    PI: 4.8192
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0047s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS105.57.5e-331645282373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                           +lL + Aea + +++el + +   +se ++p g++++R  +yf +   ++ a+           +++s   +++   a+k+f+++ P+ 
  Kaladp0047s0108.1.p 164 LHLLKAHAEATDREQTELSEVIQRCISEKVNPFGETVERFSFYFFRSNDQQYAN----------LRQES---QKNFEPAFKAFYQILPLG 240
                          6899999*************************************9887776666..........34443...4567789999******** PP

                 GRAS  92 kfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvp 175
                          +f+hl+ N+aIl a+  + e++ ++Dfd+++G+QW++ l++L      +  l +T ++ +        s+ + e+t++rL   A+++gv+
  Kaladp0047s0108.1.p 241 RFAHLASNSAILAAMPADtETLNVVDFDVGEGIQWAPVLETLGRE---KKALSLTCIKWEGDCptsapSHWNFESTQRRLICHATSVGVN 327
                          ***************9887999********************964...45699999988554477778999******************* PP

                 GRAS 176 fefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.......vvvvveqe...adhnsesF 253
                          ++ + +   ++ dl ++e++ +   ++ la n+++ l ++   ++  +++ +e+L + k++ ++       ++++ e e     + ++++
  Kaladp0047s0108.1.p 328 LKVQEV---EMGDL-VSEIAKSAgrRDWLAFNCQVGLPHMA--RARNHERVTEFLIIAKHVTADsttggggIITLGEGEvfkRRTKDSDY 411
                          ****97...77788.67776655569**************8..55555668**********98655566669*******542244889** PP

                 GRAS 254 lerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                           + f+e l +  al+ +le ++p +  e+++++E  +++++i++    ++ +       +++  +   + G++ ++ls++   +ak l++
  Kaladp0047s0108.1.p 412 STFFMERLAHSQALLQALEWSFPDQLaEAKMTMECLFMSPNISSPEWLQQWK------YVKQQGDDQADIGLEGLKLSQSSLLEAKGLIA 495
                          ***********************9877999***********98755544444......445555677899*******************9 PP

                 GRAS 343 kvk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373
                            + s g r   ++++++vl W + pLv vS W
  Kaladp0047s0108.1.p 496 PGEhSFGVRKGgKNENEIVLEWGGTPLVRVSTW 528
                          9884455444468899***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.842137507IPR005202Transcription factor GRAS
PfamPF035142.6E-30164528IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MRLMMKMLLC TRFPRKKMKR AQPLDPLLPF YYMGAAQSGA ETTFLHINSP FAGSVIVDGE  60
SEIFSSSGDS PQAQMWCYKD LEFGLLAEGK IYMEDGELEL FDGGEISMLW DDCVGSFNPE  120
RSAVSSPYSI VNARDCSVES TSPVRSSVTC LKDDMDIDDQ LSLLHLLKAH AEATDREQTE  180
LSEVIQRCIS EKVNPFGETV ERFSFYFFRS NDQQYANLRQ ESQKNFEPAF KAFYQILPLG  240
RFAHLASNSA ILAAMPADTE TLNVVDFDVG EGIQWAPVLE TLGREKKALS LTCIKWEGDC  300
PTSAPSHWNF ESTQRRLICH ATSVGVNLKV QEVEMGDLVS EIAKSAGRRD WLAFNCQVGL  360
PHMARARNHE RVTEFLIIAK HVTADSTTGG GGIITLGEGE VFKRRTKDSD YSTFFMERLA  420
HSQALLQALE WSFPDQLAEA KMTMECLFMS PNISSPEWLQ QWKYVKQQGD DQADIGLEGL  480
KLSQSSLLEA KGLIAPGEHS FGVRKGGKNE NEIVLEWGGT PLVRVSTWI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-13GRAS family protein