PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0154.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 341aa    MW: 37819.1 Da    PI: 8.5518
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0154.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP122.32.2e-3860133578
                          TT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   5 egCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +gC a+ls++++yhrrhkvCe+hsk++ v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+
  Kaladp0040s0154.1.p  60 DGCVANLSKCRDYHRRHKVCEAHSKTSRVTIGGQEQRFCQQCSRFHSLGEFDDSKRSCRKRLDGHNRRRRKPQP 133
                          79*********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114129.1254131IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.1E-2860118IPR004333Transcription factor, SBP-box
PfamPF031102.0E-2860130IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-3560136IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MWDLLQGHHI GTSLTSSKRA YSLMLLSFAL AFRVLKKICV VNLKLERMGD INIFVDRYSD  60
GCVANLSKCR DYHRRHKVCE AHSKTSRVTI GGQEQRFCQQ CSRFHSLGEF DDSKRSCRKR  120
LDGHNRRRRK PQPDSLYLSS SKYISTHQGS KFVSYGTQYF PNSAVAASSW NDAAKAENNH  180
PYPSNSQLNF GANNFPSCFS QGYSGEKQFP FLQSADQSVH VSQPHLSITL EDVASSNSGH  240
KLLSSDGFDR VIDSDRASSL LSSSHPETSR FTPTQLVLCP TQPSIPTHLY NGVATESASA  300
MDSPLLADSR SNNGNSSMDF PEIIQNGSDV CHQTISFSWG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-25601301484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113130KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656129.16e-80PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_019077816.16e-80PREDICTED: squamosa promoter-binding-like protein 16
TrEMBLA0A438IRP21e-78A0A438IRP2_VITVI; Teosinte glume architecture 1
TrEMBLA5BHV41e-78A5BHV4_VITVI; Uncharacterized protein
STRINGVIT_01s0010g03910.t012e-79(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-44SBP family protein