PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0075.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 481aa    MW: 52848.2 Da    PI: 6.0583
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0075.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3204.9e-981004751374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevs 88 
                          lv+lL+e+Aea++ g+ ela+ +L rl+elasp++ ++m+Rlaayf  AL+  l + + ++ +     +   e++ ++++aa++l++++s
  Kaladp0040s0075.1.p 100 LVHLLMEAAEALT-GNRELARVILVRLKELASPTDgTNMERLAAYFSDALSGLLEH-GAHTKNVGaGGRGGGEHRPADVIAAFQLLQDMS 187
                          68********997.599*************9998769*****************99.5555555424455555669************** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg...skeeleetgerLakfAeelg 173
                          P++kf+h+taNqaIleav++e+r+Hi+D+di++G+QW++L+qaL +R+egpp  +lRiT++++  s+      +++etg+rL  fA+++g
  Kaladp0040s0075.1.p 188 PYVKFGHFTANQAILEAVAQERRIHILDYDIMEGIQWASLMQALVTRKEGPPlpHLRITALSRGGSVgrrCIGTVQETGRRLVAFAASIG 277
                          ************************************************998777*********8877888999***************** PP

                 GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfleale 262
                          +p++f+    ++ e +++ + ++ +gEal+Vn++l+l ++ ++  ++     ++L+   +l+P+++++ve+e++  ++++F+ rf+++l+
  Kaladp0040s0075.1.p 278 LPLSFHQCKLDSDEGFRPLSVKLARGEALIVNCMLHLPHFSHRAPASVA---SFLSGAETLNPRLITLVEEEVKVaGDGQFAGRFMDTLH 364
                          *******98889999999999999****************865555555...9**********************9************** PP

                 GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                          +ysal+dslea++p + ++r+ vE+++lg++i   +a   ++ + + e  ++W e+l++ G+ pv++s  + +qa+lll  ++ dgyrve
  Kaladp0040s0075.1.p 365 HYSALYDSLEAGFPMHGRARALVEKVFLGPRIAGSLARIYQM-EVQAEPNRSWWEWLGSRGLMPVRFSFANHCQANLLLGLFN-DGYRVE 452
                          *****************************************9.788999**********************************.****** PP

                 GRAS 353 eesgslv.lgWkdrpLvsvSaWr 374
                          + s+  + +gWk+r+L+++S W+
  Kaladp0040s0075.1.p 453 QLSHNRLgIGWKSRRLLTASIWT 475
                          88655555**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.15274455IPR005202Transcription factor GRAS
PfamPF035141.7E-95100475IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAMAMDETPV IDMNMVGMEF STYSNSTTTS VEEETYWTTS CPPVLGWSDV FTAGDADLYG  60
LMESMIHETD SGSPLTSAES RSNLEMAISM DEEEGKGLRL VHLLMEAAEA LTGNRELARV  120
ILVRLKELAS PTDGTNMERL AAYFSDALSG LLEHGAHTKN VGAGGRGGGE HRPADVIAAF  180
QLLQDMSPYV KFGHFTANQA ILEAVAQERR IHILDYDIME GIQWASLMQA LVTRKEGPPL  240
PHLRITALSR GGSVGRRCIG TVQETGRRLV AFAASIGLPL SFHQCKLDSD EGFRPLSVKL  300
ARGEALIVNC MLHLPHFSHR APASVASFLS GAETLNPRLI TLVEEEVKVA GDGQFAGRFM  360
DTLHHYSALY DSLEAGFPMH GRARALVEKV FLGPRIAGSL ARIYQMEVQA EPNRSWWEWL  420
GSRGLMPVRF SFANHCQANL LLGLFNDGYR VEQLSHNRLG IGWKSRRLLT ASIWTSSQQE  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-55884756378Protein SCARECROW
5b3h_D4e-55884756378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019002.20.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-178NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A061FHT30.0A0A061FHT3_THECC; GRAS family transcription factor
STRINGEOY162270.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-156GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]