PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0206.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 268aa    MW: 30344 Da    PI: 7.8877
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0206.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.61.1e-40186262278
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          Cqve+C+ad+s+ak+yhrrhkvCe+h+k + ++v+gl+qrfCqqCsrfh +sefDe krsCrrrLa+hn+rrrk+++
  Kaladp0039s0206.1.p 186 CQVENCTADMSDAKQYHRRHKVCEFHAKVQIAVVAGLQQRFCQQCSRFHLVSEFDEFKRSCRRRLAGHNQRRRKNTH 262
                          **************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114131.616183260IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.9E-32183247IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.63E-37185262IPR004333Transcription factor, SBP-box
PfamPF031108.1E-30186259IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MWKTFCALFP NRRSSIITSI SLFPLPSSYH TIWPLERGRE IRGQRSFSWL SISTLKVCFS  60
ALFSKFELQP FSPLYCSSSS SSSLLKQESI AMDRRRDEGV RRSFKEEPVF GEDEEVVEGG  120
DEDAEDEDYD VESLLDMRPG ECASGRGSVS GPTGHDTVRS SSSSTGWTPV PQHQLPSWNP  180
QPLSLCQVEN CTADMSDAKQ YHRRHKVCEF HAKVQIAVVA GLQQRFCQQC SRFHLVSEFD  240
EFKRSCRRRL AGHNQRRRKN THACPAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-34177259284squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059C8J55e-40A0A059C8J5_EUCGR; Squamosa promoter-binding-like protein
STRINGXP_010057392.19e-41(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-39squamosa promoter binding protein-like 3