PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0033s0300.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 553aa    MW: 61820 Da    PI: 6.2913
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0033s0300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2514.7e-77753672274
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaal..... 81 
                           +lL++cAe  s++d+++a++lLa l e++spdgd+++Rl+++f++A++  l+ + +++ + +pp   s+ +     +   +  +     
  Kaladp0033s0300.1.p  75 LQLLIKCAELTSQSDFSAAHRLLALLLERSSPDGDSNERLVHHFAKAISYALNYTNPTMNNFIPPFMHSSPSsaispV---V--Tannsf 159
                          689***************************************************999999999776665444343331...2..134667 PP

                 GRAS  82 ................klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTgv 147
                                           ++++++P+++f hltaNqaIleav+ge+ +Hi+Dfdi+qG+QWp ++qaL++R         ++pp+lRiTg 
  Kaladp0033s0300.1.p 160 tldhppsdalihhstyLTLNKITPFIRFIHLTANQAILEAVDGETNIHILDFDIMQGFQWPLFMQALSERYsssaspnhHPPPMLRITGT 249
                          889999999988876555****************************************************9665555555599******* PP

                 GRAS 148 gspesgskeeleetgerLakfAeelgvpfefnvlvakrledle..leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                          g+    + + l +tgerL kfA++l+++f+f++l+ ++++dl+  l  L + p+++la+n+vl lh++   + +l +    +L+++ksl+
  Kaladp0033s0300.1.p 250 GH----DLDVLMRTGERLLKFAQSLNLRFQFHPLLLHHTADLSslLAPL-LLPDDTLAINFVLYLHKFT--DETLYK----LLSTIKSLN 328
                          **....****************************777666662113333.678***************9..444555....********* PP

                 GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                          P++v+++e+ea+h ++ Fl+rf+eal++ysa+f+slea 
  Kaladp0033s0300.1.p 329 PRIVTFSEREANHKTPVFLHRFVEALDHYSAIFNSLEAX 367
                          ************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.1148552IPR005202Transcription factor GRAS
PfamPF035141.6E-7475367IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MMGSVSSEDQ DAHPSSSSSS DLAHHHFLQL TLPPSPPPPP PPLSLSSALS LTSSSTPSFQ  60
YQNFNSLPAT TPQMLQLLIK CAELTSQSDF SAAHRLLALL LERSSPDGDS NERLVHHFAK  120
AISYALNYTN PTMNNFIPPF MHSSPSSAIS PVVTANNSFT LDHPPSDALI HHSTYLTLNK  180
ITPFIRFIHL TANQAILEAV DGETNIHILD FDIMQGFQWP LFMQALSERY SSSASPNHHP  240
PPMLRITGTG HDLDVLMRTG ERLLKFAQSL NLRFQFHPLL LHHTADLSSL LAPLLLPDDT  300
LAINFVLYLH KFTDETLYKL LSTIKSLNPR IVTFSEREAN HKTPVFLHRF VEALDHYSAI  360
FNSLEAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXVNSPPLFI  480
SDLFNVTWFV TQSAATINHL QRSQTLKVLQ MGGVESQLGR GLCGGMIICS IGVFDIAGGV  540
GDAESEMELI IL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-35743654270GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022878688.18e-96scarecrow-like protein 18
SwissprotQ9ZWC53e-61SCL18_ARATH; Scarecrow-like protein 18
TrEMBLV5NBF34e-93V5NBF3_9ROSI; Lateral
STRINGcassava4.1_022511m2e-92(Manihot esculenta)
STRINGXP_009618056.19e-93(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.18e-58GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]