PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0032s0361.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 670aa    MW: 73383 Da    PI: 5.3079
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0032s0361.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.43.4e-843046673373
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel..ykalppsetsekn......sseelaalklf 84 
                          e++++ Ae +s+g+l laq +Larl+++ sp g+p+qR+a yf+e L+  l+ s+++l   +a+++s++ + +       + +l a+k f
  Kaladp0032s0361.1.p 304 EQIFKSAELLSTGNLVLAQGILARLNHQLSPIGKPLQRVAYYFKESLQLLLLLSSNNLdvNSAVTASTALS-SfspplsLILKLGAFKSF 392
                          689999******************************************99887555541144444443332.24677778888899999* PP

                 GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel 172
                          se+sP+++f+++t NqaIleave ++r+H+iDfdi++G+QW++++q+La R+  +g  sl+iT+++s  s +  el  ++e L+ fAeel
  Kaladp0032s0361.1.p 393 SEISPVVQFANFTSNQAILEAVEMHDRIHVIDFDIGYGGQWASFMQELALRNssGGVISLKITAFVS--SYDDIELGLIQESLRLFAEEL 480
                          ****************************************************767778*********..5599***************** PP

                 GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                          +v+++ +++    ++ l+  +  v  gEa+aVnl + + +     ++l+     vL+ +k+lsPk+vv  e+ +d+ + +F++ +++a+e
  Kaladp0032s0361.1.p 481 NVDLDVKIF---GFDLLNSVSHYVGDGEAVAVNLPIGILYNC--GLPLPF----VLRSIKQLSPKIVVTLERGCDRYDLPFAHNVIQAVE 561
                          ********8...999999999999************877665..566666....************************************ PP

                 GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                           y+ l++sl+a    +s+  +k+Er++++++i+ +v ++ +     + t   Wr  + ++ F+p+ ls+++++q ++l++++ ++g+++e
  Kaladp0032s0361.1.p 562 SYANLLESLDAV-NGNSDIVQKLERFMIHPAIERLVLQRFRV----QDTSPPWRTFFISSSFTPLLLSNFNESQGECLVQRTMVHGFHLE 646
                          *********887.68999******************987776....8899**************************************** PP

                 GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                          +++ slvl+W++++L+s++aW
  Kaladp0032s0361.1.p 647 KKRSSLVLCWQQKELISATAW 667
                          ********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.297276648IPR005202Transcription factor GRAS
PfamPF035141.2E-81304667IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MPLPFDFQGK PNLQQQHQLL GFFPQDLTAT EQQLQWSHAK AEEAALSGYV GREPTSVLDP  60
RRSPSPPHSS ATLSSSLGSS ASGGAPTPVA SQEPCGGGGR NYNVEFDQSM FGFILNDNSD  120
ARIDDPSGLG KLISAAPVTQ SDLDSLGAIY HHPQHQTGDE FGAFSGNLQE SGFGSGQGSI  180
FGQLGNNIVG NSCIESLFNQ QQQLQHQTTK SLINHHQPSQ SPSLFLPCGF SDQPIFHLPN  240
PKRLNTRPAL DSEQQNQIEK NQFLAQNQLQ MQASMMPASA ACKKMLQSDG TVEEMGLQQQ  300
ALFEQIFKSA ELLSTGNLVL AQGILARLNH QLSPIGKPLQ RVAYYFKESL QLLLLLSSNN  360
LDVNSAVTAS TALSSFSPPL SLILKLGAFK SFSEISPVVQ FANFTSNQAI LEAVEMHDRI  420
HVIDFDIGYG GQWASFMQEL ALRNSSGGVI SLKITAFVSS YDDIELGLIQ ESLRLFAEEL  480
NVDLDVKIFG FDLLNSVSHY VGDGEAVAVN LPIGILYNCG LPLPFVLRSI KQLSPKIVVT  540
LERGCDRYDL PFAHNVIQAV ESYANLLESL DAVNGNSDIV QKLERFMIHP AIERLVLQRF  600
RVQDTSPPWR TFFISSSFTP LLLSNFNESQ GECLVQRTMV HGFHLEKKRS SLVLCWQQKE  660
LISATAWGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-2630866725378Protein SCARECROW
5b3h_A5e-2630866724377Protein SCARECROW
5b3h_D5e-2630866724377Protein SCARECROW
5hyz_A4e-2632066721374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661679.11e-161PREDICTED: scarecrow-like protein 27
TrEMBLA0A2P5BET21e-162A0A2P5BET2_PARAD; GRAS transcription factor
STRINGVIT_15s0048g00270.t011e-160(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-110GRAS family protein