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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0024s0389.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 24003.2 Da PI: 5.2597 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.4 | 1.8e-41 | 54 | 153 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+C ++C lapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vye+ ar+rdPvyG++g i +lq+q+++l Kaladp0024s0389.1.p 54 PCAACKILRRRCDDKCLLAPYFPPSDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEGTARLRDPVYGCAGAICHLQRQVSEL 143 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +aela++++e Kaladp0024s0389.1.p 144 QAELAKAHAE 153 ******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.388 | 53 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-41 | 54 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MESSSGKTAP PTLSITPTTF NSSLSSSSSP PLSHSSPSTL MLPPPQSQVI VMSPCAACKI 60 LRRRCDDKCL LAPYFPPSDP LKFTIAHRVF GASNIIKFLQ ELPESQRADA VSSMVYEGTA 120 RLRDPVYGCA GAICHLQRQV SELQAELAKA HAEILTIQVQ KENRLASICT DDDQDQPTTI 180 SYGQCADVNQ NDELYGVASC MDPSVRASNL ESLWHDLREF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-42 | 53 | 155 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-42 | 53 | 155 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010658441.1 | 7e-72 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 3e-66 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A218XRE1 | 1e-70 | A0A218XRE1_PUNGR; Uncharacterized protein | ||||
STRING | VIT_13s0019g03700.t01 | 3e-71 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-68 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0024s0389.1.p |