PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0023s0071.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 446aa    MW: 48175.9 Da    PI: 8.9115
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0023s0071.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.13.1e-2382126145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRC ++++ g+k+CE+Hl+rgr+rsrk++e 
  Kaladp0023s0071.2.p  82 DPEPGRCRRTDGKKWRCAKDAVHGHKYCEKHLNRGRHRSRKPVEG 126
                          79****************************************986 PP
2QLQ51.72.7e-181146237
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                          FT +Q+ +L++Q+l+yKy+aan+ vP++L+ +i+k
  Kaladp0023s0071.2.p 11 LFTQNQWFELEQQALIYKYIAANVSVPSNLIIPIKK 46
                         6*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.6E-101046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.4771146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.0E-131244IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.91182126IPR014977WRC domain
PfamPF088791.7E-1983125IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MHAPFAGARQ LFTQNQWFEL EQQALIYKYI AANVSVPSNL IIPIKKSFNP WGLPGSISPN  60
GSLSSSSFGW GPFHLGFHGS TDPEPGRCRR TDGKKWRCAK DAVHGHKYCE KHLNRGRHRS  120
RKPVEGQKPD QSVAGAANFA NKVAPMASSL SKASVMPGGR SANGLAAKGA HSTLNPFTDL  180
ITKRTQDLQG ISMLSPAISL GSKDASFAIP KPKDPFEESY QSEFGFVSSD YLQNPYQKIS  240
SCLNSSFVDF SDQDSRDQHP LRQFMEDWPK ERSEHSSLTW QDETKPDWTK LSMAIPVVSS  300
GLSSSASSPT HERLALSPLR LGLEFHQNEM GANEFGEPFP KDPAYMPWGS SAGGPLGEVL  360
KISSSKRPHI ENPSGLNLMT KGWDGAKAQF EPSPTGVLLK SAFGSLSNSS AGSSPRGESR  420
MTSEAGSLCN DAPGSTTLVS SLPFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890408.11e-146growth-regulating factor 1 isoform X1
RefseqXP_015890409.11e-146growth-regulating factor 1 isoform X2
TrEMBLA0A438FBN51e-139A0A438FBN5_VITVI; Growth-regulating factor 1
TrEMBLA5CAY71e-140A5CAY7_VITVI; Uncharacterized protein
STRINGVIT_00s0494g00010.t011e-139(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.16e-64growth-regulating factor 1