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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0017s0020.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 441aa MW: 48930.5 Da PI: 6.5013 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 124.1 | 6e-39 | 148 | 224 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++dls+ k+y++rh+vC v +k ++v+v+g+++rfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++ Kaladp0017s0020.2.p 148 TCQVQGCDMDLSSSKDYYKRHRVCPVDTKKAQVTVNGIQKRFCQQCSRFHLLDEFDEDKRSCRKRLAGHNRRRRKPR 224 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-30 | 143 | 210 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.419 | 146 | 223 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.92E-36 | 147 | 226 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.8E-30 | 149 | 222 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MEFWGCDSEG YDLFSEDEEL DLGAEEPDRS GNMLFEFDLD SPFGLEEDPI IMDEQVMERY 60 LQMESGLSDL IAMSNPAAEN LGAGDGIFSG DDANVASPDC GLSSFSIPGG DGSSPDDISN 120 KISDVSNANS SLPEKRAHSE LSSSSKVTCQ VQGCDMDLSS SKDYYKRHRV CPVDTKKAQV 180 TVNGIQKRFC QQCSRFHLLD EFDEDKRSCR KRLAGHNRRR RKPRFENRIS RPHRFQPYQG 240 TRPHGQAAPP RRHLMSDLLP RRILFPDIYE QINGLRLQGG GSVYGPTPSD INTSRSHCLG 300 PEYYATPVRP SAVRNSSRVS DPCYALSLLS NQPQVSSPYF ASPVIVHGHN IFNRVSFPSP 360 HMLHPAGVNL CQIAPRMVPG YASPVGFDIS ENHHRRPLCS NCSNCSNCSG GRQPPEHAST 420 VDLRQLSFNL TRVEHQRNVP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-25 | 143 | 222 | 5 | 84 | squamosa promoter binding protein-like 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 222 | KRSCRKRLAGHNRRRRKP |
2 | 217 | 223 | RRRRKPR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-35 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0017s0020.2.p |