PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0016s0167.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 255aa MW: 28174.1 Da PI: 9.2593

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0016s0167.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.9	1.1e-41	140	216	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq egC+adls+ak+yhrrhkvCe+hska++v++ gl+qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrrk+ Kaladp0016s0167.2.p 140 RCQTEGCTADLSNAKQYHRRHKVCEFHSKAATVITGGLTQRFCQQCSRFHLLTEFDNGKRSCRRRLAEHNRRRRKTP 216 6*************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.6E-35	133	202	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.565	138	215	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-38	139	217	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.1E-31	141	214	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MLEYELWGTP SQMTLANSGH DPPAVASHHG VETFSTNASS SHPQSHNSAL PLDYAHQNAA 60 FWSSPNPYTF SYAPLHNQNA AFYSSANPNF FLKTEEGSLG TRLGLNLGRR TYFSAQDDGF 120 VSRLYHRGGL GGSGSVSAPR CQTEGCTADL SNAKQYHRRH KVCEFHSKAA TVITGGLTQR 180 FCQQCSRFHL LTEFDNGKRS CRRRLAEHNR RRRKTPRQPS SQGQLELQKS HMDNSSSETL 240 AKCLPESSAM THPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-33	131	214	1	84	squamosa promoter binding protein-like 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021612203.1	3e-71	squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	7e-60	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A2C9VVM1	7e-70	A0A2C9VVM1_MANES; Uncharacterized protein
STRING	cassava4.1_023056m	1e-70	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	3e-46	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	Kaladp0016s0167.2.p

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]