PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0016s0065.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 1047aa MW: 114934 Da PI: 7.6601

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0016s0065.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.9	3.8e-40	125	202	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Kaladp0016s0065.2.p 125 TCQVDSCMVDLSIAKDYHRRHKVCEAHSKATQALVGKQMQRFCQQCSRFHVLSEFDEGKRSCRRRLAGHNRRRRKTQP 202 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.9E-32	118	187	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.282	123	200	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.14E-36	124	204	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.9E-29	126	199	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	1.7E-5	827	941	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.29E-6	828	931	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.96E-5	834	941	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1047 aa Download sequence Send to blast
MARKRDLPYQ QQELMIDQPH HPSGGLNSSR DYWSSNRWNW DCTRFVAQQV DGDAMNLDAP 60 VQSIQNKINI NQVAVEDDGS LCLKLGSGSG GSSSSDEPAL RPSKRVAGGN NARSPGGSGN 120 GNHTTCQVDS CMVDLSIAKD YHRRHKVCEA HSKATQALVG KQMQRFCQQC SRFHVLSEFD 180 EGKRSCRRRL AGHNRRRRKT QPDDVTSRLW SAGGQENAVN TGLDLVSLLA ALARAQGNQD 240 NANCVQASVP GKEQLIQLIS KINSFSPPSD AATKLPVSDK LEKTNVEASP EHQSGSSANS 300 SSQSTLNLLG VLPLASPVSA PDAFTAPSQR SSHSSDSEKT KSADTYQPDP RVLRKRTILD 360 FSSVGGERSC NSSHYPAEDS NSHVHDAQVN LPLQLFFSSP EDNNSPPKMA DSSKYFSSDS 420 SNQNEERSPS CSPGVQLFPV KPSKLTLNND RIPNGLNAKT QAGKSPCGTV SFDLFGGSKK 480 GVEVDFCEGS PNQVGYASPV SAYSPSSSTC GTQDLTGRIL FKLFDKDPSH LPVALRSEIL 540 AWLSNSPSQM ESYIRPGCVV LSVYVSMPSS SWEQLEENLL EQVSRLLQRT DIDIWRDGRF 600 LVQTGKQLAS HNNGKLRLCK SWITPKAPEL VSVSPLAIVG GHETRVHLRG RNLNCRTKIH 660 CTYMGGYITK DICNTAVHDC TCDRTSLCGC EIHIAAPSGT GRCFIEVDNG FKGNSHPIII 720 ADSTICQELR QLEFEFETDP RLNDAMSEVQ ESDVLRPKAE VLHFLNELGW LFQTKDSSNT 780 LEYSIYRFKF LLIFSVEKDF FVLVKKLLDI LVEEKLGGKI PMEVSEMVSG IQLLHRAVKR 840 RCRKMVDMLV NYSIVSRDPK LSKIYVFPPN CTGPGGLTPL HIAACTSGLE DVVDALTNDP 900 TELGLCCWES QLDESGQSPY AYATLRNNLS YNRLVAQKLA DRRNNQISLS VEVNETMEQA 960 WVEPSPAASH VTKHKAGSCS QCAAVVARCS NRRRVPGSHG MVGRPFILSM LAVAAVCVCV 1020 CLYFRGYPYT GMVSPFTWEK LDYATI*

Sequence ? help Back to Top

Protein Sequence Length: 1047 aa Download sequence Send to blast

MARKRDLPYQ QQELMIDQPH HPSGGLNSSR DYWSSNRWNW DCTRFVAQQV DGDAMNLDAP  60
VQSIQNKINI NQVAVEDDGS LCLKLGSGSG GSSSSDEPAL RPSKRVAGGN NARSPGGSGN  120
GNHTTCQVDS CMVDLSIAKD YHRRHKVCEA HSKATQALVG KQMQRFCQQC SRFHVLSEFD  180
EGKRSCRRRL AGHNRRRRKT QPDDVTSRLW SAGGQENAVN TGLDLVSLLA ALARAQGNQD  240
NANCVQASVP GKEQLIQLIS KINSFSPPSD AATKLPVSDK LEKTNVEASP EHQSGSSANS  300
SSQSTLNLLG VLPLASPVSA PDAFTAPSQR SSHSSDSEKT KSADTYQPDP RVLRKRTILD  360
FSSVGGERSC NSSHYPAEDS NSHVHDAQVN LPLQLFFSSP EDNNSPPKMA DSSKYFSSDS  420
SNQNEERSPS CSPGVQLFPV KPSKLTLNND RIPNGLNAKT QAGKSPCGTV SFDLFGGSKK  480
GVEVDFCEGS PNQVGYASPV SAYSPSSSTC GTQDLTGRIL FKLFDKDPSH LPVALRSEIL  540
AWLSNSPSQM ESYIRPGCVV LSVYVSMPSS SWEQLEENLL EQVSRLLQRT DIDIWRDGRF  600
LVQTGKQLAS HNNGKLRLCK SWITPKAPEL VSVSPLAIVG GHETRVHLRG RNLNCRTKIH  660
CTYMGGYITK DICNTAVHDC TCDRTSLCGC EIHIAAPSGT GRCFIEVDNG FKGNSHPIII  720
ADSTICQELR QLEFEFETDP RLNDAMSEVQ ESDVLRPKAE VLHFLNELGW LFQTKDSSNT  780
LEYSIYRFKF LLIFSVEKDF FVLVKKLLDI LVEEKLGGKI PMEVSEMVSG IQLLHRAVKR  840
RCRKMVDMLV NYSIVSRDPK LSKIYVFPPN CTGPGGLTPL HIAACTSGLE DVVDALTNDP  900
TELGLCCWES QLDESGQSPY AYATLRNNLS YNRLVAQKLA DRRNNQISLS VEVNETMEQA  960
WVEPSPAASH VTKHKAGSCS QCAAVVARCS NRRRVPGSHG MVGRPFILSM LAVAAVCVCV  1020
CLYFRGYPYT GMVSPFTWEK LDYATI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	116	199	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	835	840	RAVKRR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009372667.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
TrEMBL	F6I6X1	0.0	F6I6X1_VITVI; Uncharacterized protein
STRING	XP_009372667.1	0.0	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	Kaladp0016s0065.2.p