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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s1201.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18207.6 Da PI: 9.2316 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 83.9 | 2.3e-26 | 2 | 100 | 1 | 94 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+ lr++C ++Cvl+p + ++q +++ +++k+FG+s ++ +l+a+p+++++++++sl++eA+ r+ +Pv+Gavg+++++++ Kaladp0011s1201.1.p 2 SCNGCRALRKGCGDSCVLRPSLqwiagHQAQVHATLFAAKFFGRSDLIGFLSAVPHDRKPALFQSLLFEACGRTINPVSGAVGLLSAGNW 91 6*********************99887678889********************************************************* PP DUF260 86 qleqlkael 94 +l+q++++ Kaladp0011s1201.1.p 92 HLCQAAVDG 100 ****99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.171 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-23 | 2 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSCNGCRALR KGCGDSCVLR PSLQWIAGHQ AQVHATLFAA KFFGRSDLIG FLSAVPHDRK 60 PALFQSLLFE ACGRTINPVS GAVGLLSAGN WHLCQAAVDG VLSGRTPQPL QESTTPTRTT 120 LNNTSSKTEG IERMRSANNA SSFTGSELLF SGNFHNQDSG GRGGKILNLF I* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028056214.1 | 6e-58 | LOB domain-containing protein 39-like | ||||
Swissprot | Q9SN23 | 3e-50 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2R6RNC1 | 3e-55 | A0A2R6RNC1_ACTCH; LOB domain-containing protein | ||||
TrEMBL | A0A498HRD9 | 6e-55 | A0A498HRD9_MALDO; Uncharacterized protein | ||||
STRING | XP_009354105.1 | 6e-56 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 4e-52 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s1201.1.p |