PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s1020.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARR-B
Protein Properties Length: 537aa    MW: 59388.2 Da    PI: 7.4109
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s1020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.47.7e-24203256155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k r++W+ eLH++F++av+q+ G +k  Pk+il+ m+v++Lt+++v+SHLQkYRl
  Kaladp0011s1020.1.p 203 KSRVVWSMELHQKFLDAVNQI-GYDKLGPKKILDKMNVPSLTRDNVASHLQKYRL 256
                          68*******************.********************************8 PP
2Response_reg81.62.5e-27191271109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+p+ +++l+++l+k  y +v+++  + +al++l+e++  +D+++ D++mp+mdG++ll+++  e  +lp+i+++  ge + + +
  Kaladp0011s1020.1.p  19 VLVVDDDPTWLKILEKMLKKCSY-QVTTCGLAVDALAMLRENRnsFDIVISDVNMPDMDGFKLLEQLGLEM-DLPVIMMSVDGETSRVMK 106
                          89*********************.***************999999**********************6654.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ ++el +
  Kaladp0011s1020.1.p 107 GVRHGACDYLLKPIRMKELSN 127
                          ****************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.0E-1441520IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23006.0E-4416149No hitNo description
SuperFamilySSF521721.27E-3516139IPR011006CheY-like superfamily
SMARTSM004481.8E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.30418133IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.9E-2419127IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.46E-3120132No hitNo description
Gene3DG3DSA:1.10.10.604.3E-26200261IPR009057Homeodomain-like
SuperFamilySSF466895.38E-18201260IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-22203256IPR006447Myb domain, plants
PfamPF002491.4E-6205255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MESGFSSPRA DKFPAGLRVL VVDDDPTWLK ILEKMLKKCS YQVTTCGLAV DALAMLRENR  60
NSFDIVISDV NMPDMDGFKL LEQLGLEMDL PVIMMSVDGE TSRVMKGVRH GACDYLLKPI  120
RMKELSNIWQ HVYRKKMHEV KDMADSNSKP VGSLHMMKNE TDDFDGQLHP GNGVSSGGVK  180
KRKDSERKRH GNPDLVDPSS SKKSRVVWSM ELHQKFLDAV NQIGYDKLGP KKILDKMNVP  240
SLTRDNVASH LQKYRLYLAK VQNDNDQKTS SGGTKHQAFS PGDSAGSFDF GSVFSLDQKN  300
TAGAAQFGYS ANRLLVDELG MGFLEGDTEG TMVSFSPAGR PATPWKSDLP DPRKASSPRI  360
QPVQAFSSLD RSYKYQQFEF EPAAHQWNKG PAPAPMMQFA QANQQMMTSC HNAGNTFWSR  420
SNLMAAQPLQ DTFHSAYNNI SSDHPWPLMA PYRSQAPPPL MPDAKLPNLT QNYNAAKSSF  480
HQADLKFSAA AFSSNDNGSV VESRPFQGLG GSGMNKNSDC FIPELMDELG SAICFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18199261163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248808.11e-151PREDICTED: two-component response regulator ORR26-like isoform X1
SwissprotQ5N6V81e-118ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A200R4E21e-151A0A200R4E2_9MAGN; Two-component response regulator
STRINGXP_010248808.11e-150(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-110response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]